Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5632
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    29   0.90 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    28   1.2  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    28   1.6  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.8  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    27   2.8  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   8.4  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 387 VSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPK 500
           +++  PT  +  PS  P    S  KSV+RA+E  P  K
Sbjct: 194 ITEANPTCEKRKPSRSPSPMLSKKKSVARASENEPSAK 231


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 423 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPISESSP 587
           P ++ +L    S + S  T Q   P+     RPEP+ S     CP   P     P
Sbjct: 117 PLSDSQLDTGDSPATSETTVQDYNPQVQSYCRPEPLSSNHVRSCPPFPPTQHHHP 171


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 345 SKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPR---SGSKSVSRATEQFPEPKSGPV 512
           +KPG+   V     + K +   +  + S E K+ R   S S+S+S  TEQ   PK  PV
Sbjct: 150 TKPGEPE-VKQETNLQKEKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKIQPV 207


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 384 TVSKLRPTIRESIPSAEPKLPRSGSKSVS 470
           TVS   P+  E  PS+ P LP +GS+S S
Sbjct: 114 TVSIASPSTPELPPSSSPLLPPNGSESSS 142


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -1

Query: 256 AIATDSGRLGWRVEP-MLCTADFPCTCVCD 170
           A+  D G  GW + P   CTA   C   C+
Sbjct: 83  AVTPDEGNAGWAMSPDQYCTAGTWCPYACE 112


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 25/83 (30%), Positives = 35/83 (42%)
 Frame = +3

Query: 342 NSKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARP 521
           +SKP +         V   +PT   S PSA P       +S    ++  P  +    A+P
Sbjct: 273 HSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAE----AKP 328

Query: 522 EPVWSEPT*LCPRAGPISESSPI 590
           EPV   P     RA P SES+ +
Sbjct: 329 EPV---PASAAERA-PTSESTTV 347


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 538 SLHTGSGLATGPDFGSGNCSVALETDFE 455
           S+H+      G D G+GN +  LETD E
Sbjct: 15  SVHSREVSVNGSDSGTGNDAYKLETDDE 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,411
Number of Sequences: 5004
Number of extensions: 54198
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)