Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5632
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical ... 33 0.16
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 32 0.36
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 32 0.36
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 32 0.36
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 30 1.5
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical ... 29 2.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 2.6
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 29 3.4
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 29 3.4
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 29 3.4
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 29 3.4
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 29 4.5
U53332-11|AAK31531.1| 668|Caenorhabditis elegans Protein tyrosi... 29 4.5
AF015882-1|AAC21678.1| 668|Caenorhabditis elegans protein tyros... 29 4.5
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 28 5.9
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p... 28 7.8
Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical pr... 28 7.8
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 7.8
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 7.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 7.8
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 7.8
>AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical
protein Y73C8C.8 protein.
Length = 946
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 408 IRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRA 563
+RE P AE P S SK V ++ +P P+A+PE S C RA
Sbjct: 555 VREISPVAENLEPTSESKRVKSKKQKKQKPSENPIAKPEEKQSNACPKCFRA 606
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 586 GLDSEIGPALGHS*VGSLHTGSGLATGPDFGSGN 485
G ++ +GP G+ G GSG A G FGSGN
Sbjct: 59 GGNNNVGPRFGNGNAGGTGFGSGNAGGTGFGSGN 92
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 586 GLDSEIGPALGHS*VGSLHTGSGLATGPDFGSGN 485
G ++ +GP G+ G GSG A G FGSGN
Sbjct: 59 GGNNNVGPRFGNGNAGGTGFGSGNAGGTGFGSGN 92
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 586 GLDSEIGPALGHS*VGSLHTGSGLATGPDFGSGN 485
G ++ +GP G+ G GSG A G FGSGN
Sbjct: 59 GGNNNVGPRFGNGNAGGTGFGSGNAGGTGFGSGN 92
>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
F20C5.2b protein.
Length = 1130
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 188 RKISSTQHGLHPPTKPTRVSRNRSSKAKIS 277
+K + LHPPT P+++S++ SS + ++
Sbjct: 1069 KKFKCSMKRLHPPTSPSKISKSASSSSDLT 1098
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 414 ESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT 545
+S+ +PK P+ SK+ ++ + P+PK P P+P +EP+
Sbjct: 14 DSLGGPKPKDPKLASKAPAKKPSETPKPKEVPKELPKP--AEPS 55
>AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical
protein K06A5.4 protein.
Length = 877
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/88 (26%), Positives = 41/88 (46%)
Frame = +2
Query: 317 RTQLQLVQQFQTRAAMVGLKPKDSFKTSPNNQGINSKRRTKITTVRLKISFKGNRTISRT 496
RT + ++ TRA+++ +DS + NN NS R + ++ +FK + +S
Sbjct: 749 RTPIVTKKRGGTRASIMPKPVEDSPMSRGNNSTFNSPRLEQTKAKDIETNFKYVQHLSMM 808
Query: 497 KIRSSCKARTSME*TNLTMSKGRANFRI 580
+ R S + + S N T +G N I
Sbjct: 809 QARPSSRLKKSSSMNNSTY-RGNKNTSI 835
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 444 PRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPISESSP 587
PR S+ S + E+ P+ P P S PT PR P + S P
Sbjct: 390 PRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPP 437
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 444 PRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPISESSP 587
PR S+ S + E+ P+ P P S PT PR P + S P
Sbjct: 411 PRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPP 458
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 444 PRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPISESSP 587
PR S+ S + E+ P+ P P S PT PR P + S P
Sbjct: 396 PRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPP 443
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +3
Query: 372 SNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPE-PKSGPVARPEP--VWSEP 542
+ PR+ PT ++ + PK P++ + T + P PK+ V PEP V EP
Sbjct: 446 ATPRSSVPATPT-ESNLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEPEPVAEEP 504
Query: 543 T*LC---PRAGPISESSP 587
+ P P++E+ P
Sbjct: 505 EPVAEPEPEPEPVAEAEP 522
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +3
Query: 372 SNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPE-PKSGPVARPEP--VWSEP 542
+ PR+ PT ++ + PK P++ + T + P PK+ V PEP V EP
Sbjct: 396 ATPRSSVPATPT-ESNLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEPEPVAEEP 454
Query: 543 T*LC---PRAGPISESSP 587
+ P P++E+ P
Sbjct: 455 EPVAEPEPEPEPVAEAEP 472
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +3
Query: 372 SNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPE-PKSGPVARPEP--VWSEP 542
+ PR+ PT ++ + PK P++ + T + P PK+ V PEP V EP
Sbjct: 446 ATPRSSVPATPT-ESNLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEPEPVAEEP 504
Query: 543 T*LC---PRAGPISESSP 587
+ P P++E+ P
Sbjct: 505 EPVAEPEPEPEPVAEAEP 522
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +3
Query: 372 SNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPE-PKSGPVARPEP--VWSEP 542
+ PR+ PT ++ + PK P++ + T + P PK+ V PEP V EP
Sbjct: 446 ATPRSSVPATPT-ESNLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEPEPVAEEP 504
Query: 543 T*LC---PRAGPISESSP 587
+ P P++E+ P
Sbjct: 505 EPVAEPEPEPEPVAEAEP 522
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = +3
Query: 378 PRTVSKLRPTIRESIPSA--EPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*L 551
P L PT++E +P+ P LPR Q P ++ P P PV P
Sbjct: 76 PPMTMMLPPTVQEPLPTPVKTPPLPRPPGNLNPVQQPQIPVQRTPPQCPPPPVPHPPQ-- 133
Query: 552 CPRAGPISESSP 587
+ PI +SP
Sbjct: 134 ITQMAPILPTSP 145
>U53332-11|AAK31531.1| 668|Caenorhabditis elegans Protein tyrosine
phosphatase protein2 protein.
Length = 668
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 393 KLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARP 521
+LRPT S PS+ ++ S S + + P++GP A P
Sbjct: 605 RLRPTPNASRPSSARQVTSSRPSSSASSRTSHSRPRTGPQAEP 647
>AF015882-1|AAC21678.1| 668|Caenorhabditis elegans protein tyrosine
phosphatase protein.
Length = 668
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 393 KLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARP 521
+LRPT S PS+ ++ S S + + P++GP A P
Sbjct: 605 RLRPTPNASRPSSARQVTSSRPSSSASSRTSHSRPRTGPQAEP 647
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 378 PRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKS 503
P++ K +P ++ P+ +PK+ +K+V ++ +PKS
Sbjct: 338 PKSAEKKKPDTKKETPTKKPKVELVTAKTVEGEKKETKKPKS 379
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 312 WNVPSYS*SNNSKPGQLWWVSNPRTVSKLRPTIRE-SIPSAEPKLPRSGSKSVSRATEQF 488
+ VPS ++S P + W++N R SK ++E + P + +P VS E+
Sbjct: 2771 FTVPSLLELDDSSPLKNTWLTNTRKNSKGEKKVKENTAPVQQAPVP------VSPPREET 2824
Query: 489 PEPKSGPVAR 518
PEP P R
Sbjct: 2825 PEPTPSPPVR 2834
>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/70 (31%), Positives = 28/70 (40%)
Frame = +3
Query: 381 RTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPR 560
RT ++ RES S + P+ S S +T P RP PV P P
Sbjct: 588 RTNAQRESVERESSQSPQLYDPKRIPHSASISTNIPGSPTQ--FNRPPPVLHSPRSALPS 645
Query: 561 AGPISESSPI 590
AGP S P+
Sbjct: 646 AGPFSSPQPV 655
>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/70 (31%), Positives = 28/70 (40%)
Frame = +3
Query: 381 RTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPR 560
RT ++ RES S + P+ S S +T P RP PV P P
Sbjct: 588 RTNAQRESVERESSQSPQLYDPKRIPHSASISTNIPGSPTQ--FNRPPPVLHSPRSALPS 645
Query: 561 AGPISESSPI 590
AGP S P+
Sbjct: 646 AGPFSSPQPV 655
>Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical
protein M03C11.2 protein.
Length = 848
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 411 RESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPV 530
+E I K +G + + A E PEP++ P+ P+PV
Sbjct: 481 KEEIKKENEKPKLTGIQKLMAAKEAEPEPEAEPLPPPKPV 520
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 402 PTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPIS 575
P+ PS++ P +GS + S+ + Q P P P + P S + + P S
Sbjct: 384 PSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNP-SSSTPTGSSQSTITPEGSTAS 440
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 402 PTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPIS 575
P+ PS++ P +GS + S+ + Q P P P + P S + + P S
Sbjct: 591 PSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNP-SSSTPTGSSQSTITPEGSTAS 647
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 402 PTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPIS 575
P+ PS++ P +GS + S+ + Q P P P + P S + + P S
Sbjct: 591 PSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNP-SSSTPTGSSQSTITPEGSTAS 647
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +3
Query: 399 RPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPI 572
RPT ES P P LP S + + T P PK P RP P+ + P P + P+
Sbjct: 68 RPT--ESPPLPPPPLPLSNPPA--KPTPPPPPPK--PTIRPPPIPASPPPRPPASEPV 119
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +3
Query: 399 RPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPI 572
RPT ES P P LP S + + T P PK P RP P+ + P P + P+
Sbjct: 290 RPT--ESPPLPPPPLPLSNPPA--KPTPPPPPPK--PTIRPPPIPASPPPRPPASEPV 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,408
Number of Sequences: 27780
Number of extensions: 322729
Number of successful extensions: 1206
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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