Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5628
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    28   0.83 
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    27   2.5  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   4.4  

>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 27  RVTLADEQDEEDTARRHEEAVEKL 98
           +V L +EQ E++ A RHE AV K+
Sbjct: 196 QVALMEEQGEDEQAIRHERAVAKI 219


>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 226 PKRYSVAVTRTKHTDGEARVGIVEPWPPLASS 321
           P   S+AV  TKH DGE    +     PL+SS
Sbjct: 205 PHISSLAVPSTKHLDGERDRNLKRSTSPLSSS 236


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 468 MSFLIYRVFIFCLRILFPVYITSLV 542
           + FL+   FIFCL  LF +Y++S V
Sbjct: 50  LGFLV-EFFIFCLIPLFVIYVSSKV 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,623
Number of Sequences: 5004
Number of extensions: 46498
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)