Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5628
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0090 + 6676296-6676802,6678550-6678855                           29   2.0  
02_04_0311 + 21936812-21937861                                         29   2.6  
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    28   4.5  
09_04_0183 + 15389691-15390197,15391259-15391582                       28   6.0  
07_01_0161 + 1132505-1132704,1132839-1134075                           27   7.9  

>02_02_0090 + 6676296-6676802,6678550-6678855
          Length = 270

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 120 SKLDSGICMPPEMKFTNKVSPHTWMG 197
           S L SG C PP +   N VSP  W G
Sbjct: 166 SPLQSGCCKPPAVCGYNYVSPTVWAG 191


>02_04_0311 + 21936812-21937861
          Length = 349

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 24  VRVT-LADEQDEEDTARRHEEAVE 92
           VRV  +A+  DEE+T RR EEAVE
Sbjct: 203 VRVEEVAEASDEEETRRREEEAVE 226


>09_06_0371 +
           22615809-22617431,22618312-22618422,22619361-22619453,
           22619562-22619661,22619754-22619834,22620774-22621047,
           22621254-22622069,22622921-22623029,22623509-22623602,
           22623881-22623939,22624150-22624197
          Length = 1135

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 12  PIKPVRVTLADEQDEEDTARRHEEAVEKLNSMIKLHSKLDS 134
           P+ P+RV +  +   +DT R +++  E L+   +   K  S
Sbjct: 809 PLSPLRVPIPSDDGHDDTKREYDKMTENLSPQQQCRDKQTS 849


>09_04_0183 + 15389691-15390197,15391259-15391582
          Length = 276

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 120 SKLDSGICMPPEMKFTNKVSPHTWMGVPNNTRYP 221
           S L+SG C PP       VS   W  VP N+  P
Sbjct: 166 SPLESGCCKPPSSCNFLYVSGTNWTKVPTNSSDP 199


>07_01_0161 + 1132505-1132704,1132839-1134075
          Length = 478

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = +3

Query: 69  RRHEEAVEKLNSMIKLHSKLDSGICMPPEMKFTNKVSPHTWM-GVPNNTRYPTAEEVFRG 245
           RR+  A +K +S     S    G    P ++ T  + PH W+  +P   R   A E   G
Sbjct: 394 RRYISAWQKPSSSSSSSSSSGHGDRRTPLLQLTAVIGPHAWLEELPPRAR-SVAVEAIDG 452

Query: 246 SNSH*AHRWRGEG 284
                 HR  G G
Sbjct: 453 REEQAVHRNVGGG 465


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,045,930
Number of Sequences: 37544
Number of extensions: 319094
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)