Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5628
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81493-9|CAB04045.1|  347|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81130-4|CAB03414.2|  512|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81493-9|CAB04045.1|  347|Caenorhabditis elegans Hypothetical
           protein F01D5.10 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 96  LNSMIKLHSKLDSGICMPPEMKFTNKVSPHTW 191
           +  ++K H K   G+  P     TN  SP TW
Sbjct: 221 MRKLLKQHEKTAEGLAGPVRTFITNHFSPQTW 252


>Z81130-4|CAB03414.2|  512|Caenorhabditis elegans Hypothetical
           protein T23G11.5 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 45  EQDEEDTARRHEEAVEKLNSMIKLHSKLDSGICMPPEMKFTNKVSPHTWMGVPNN 209
           E+DE  TA+ HEE  ++   +  LHSK+ +        + T ++  H W  V NN
Sbjct: 325 EEDELKTAQIHEELTKQQFLLDLLHSKISA---RHERGRTTAELDEHAWQ-VQNN 375


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
           protein C27H6.1 protein.
          Length = 1657

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 48  QDEEDTARRHEEAVEKLNSMIKLHSKLDSGICMPPEMKFTNKVSPHTWMGVPNNTRYPTA 227
           Q+++ T  +H+  VEK   M+   +K       PP ++ T+  +PH      N  + P  
Sbjct: 270 QNDDVTTEKHQNEVEKSKKMLNFLAK-------PPTVEITSPDAPHQGAFHDNTPKEPKV 322

Query: 228 EE 233
            E
Sbjct: 323 VE 324


>Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical
           protein F09F3.2 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 104 GVKFFDGLLVTSCSIFFILFV 42
           G+KF  G+ +T+C+I  +LF+
Sbjct: 127 GIKFLIGIPITTCAISAVLFI 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,763,473
Number of Sequences: 27780
Number of extensions: 269903
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)