Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5628
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.7  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   6.5  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   6.5  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   6.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 470 HNGITLKTFKCVKSRLDF 417
           HN +T KT  C +  LD+
Sbjct: 162 HNSVTGKTTACFEPSLDY 179


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 380 LVTWLIVNPECGHPSPGCCFEDASGGQGSTIPTLASPSVCLVRVTATEYLFGS 222
           +  W I    C H  PG   ED+   + +    L  PS+   ++ A  + F S
Sbjct: 9   IAAWFIA---CTHSFPGAHDEDSKEERKNVDTVLVLPSIERDQMMAATFDFPS 58


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 380 LVTWLIVNPECGHPSPGCCFEDASGGQGSTIPTLASPSVCLVRVTATEYLFGS 222
           +  W I    C H  PG   ED+   + +    L  PS+   ++ A  + F S
Sbjct: 9   IAAWFIA---CTHSFPGAHDEDSKEERKNVDTVLVLPSIERDQMMAATFDFPS 58


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 380 LVTWLIVNPECGHPSPGCCFEDASGGQGSTIPTLASPSVCLVRVTATEYLFGS 222
           +  W I    C H  PG   ED+   + +    L  PS+   ++ A  + F S
Sbjct: 9   IAAWFIA---CTHSFPGAHDEDSKEERKNVDTVLVLPSIERDQMMAATFDFPS 58


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 270 ICVLSASYCHGIP 232
           I +LSA  CHG P
Sbjct: 7   ILILSARICHGNP 19


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 55  KKILQDVTRRPSKNLTP 105
           +KI+++  +  +KNLTP
Sbjct: 461 EKIIEEKRKNKNKNLTP 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,941
Number of Sequences: 438
Number of extensions: 3071
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)