Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5627
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 32 0.058
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 27 1.7
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 27 2.2
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 26 3.8
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 26 5.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 6.7
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 6.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 8.8
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 25 8.8
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 32.3 bits (70), Expect = 0.058
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 3/143 (2%)
Frame = -1
Query: 439 PENPRTSPNSAPTSLKWTTESGNRPGRGPERNQL-NLGTRNDRAANETADTLRAPTRNKR 263
P N TSP +P S +S R + L + R + ++ + +
Sbjct: 332 PLNISTSPQPSPLSFSEIPQSDTRNALENFLDNLPSPSEERSRISRSASEARKLGINAQS 391
Query: 262 RTETGTRKLTSRLETVARRHRLTRGDAPAPTTGAPSEQTGTATGLAETLH*EN--TNARP 89
R + + + S +R+ L +A +PT+G PS A + + E T R
Sbjct: 392 RYASISSAVLSPPSEASRKFSLYESEAISPTSGTPSNLEKGAGNVPDVSLLEQLATTIRR 451
Query: 88 DELTRQTTRSQDAKSPIQKKKKK 20
E QTT+ Q A+ IQ+ + +
Sbjct: 452 LEAELQTTKQQVAQLIIQRDQAR 474
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 304 ETADTLRAPTRNKRRTETGTRKLTSRLETVARRHRLTRGDAPAPTTGAPSEQTGTATG 131
+ AD L T RRT++ S T + + + G + PTTG ++Q G+ G
Sbjct: 449 QLADALNDSTA--RRTQSSPSGTNSSTSTSSTSSKHSTGISTEPTTGEENKQDGSVGG 504
>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -1
Query: 226 LETVARRHRLTRGDAPAPTTGAPSEQTGTATGLAETLH*ENTNARPDELTRQTTRSQDAK 47
LE R ++T+G+ P TG P+ + E L+ + + D TT ++ AK
Sbjct: 123 LEDQERLEKVTQGECPMDPTGLPAALGSAYSICGEELYVDKFMTKQDIQEHITTYTEAAK 182
Query: 46 SPI 38
+
Sbjct: 183 RAV 185
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 322 NDRAANETADTLRAPTRNKRRTETGTRKLTSRLETVAR 209
+D++ +E A+T ++NKR+T + K+ R E R
Sbjct: 253 DDQSEHEQAETPIPSSKNKRKTRSQRNKIRQRREEELR 290
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 110 REHKRETRRTNSPDYQKPRREEPHSKKK 27
+E K E R++ P Y+K R+ + +KK
Sbjct: 494 KEDKAEKRKSKIPKYEKKRKLKQSGRKK 521
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/33 (33%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 110 REHKRETRRTNSPD-YQKPRREEPHSKKKKKNS 15
++ K+E +R +SP+ +K +++ SKKK+++S
Sbjct: 52 KKSKKEAKRASSPEPSKKSVKKQKKSKKKEESS 84
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = -3
Query: 290 TSGSDAEQAPHRNRDAKTNK------SLRDSSASPPPDKRRRTS 177
T S+++QAP + +K+N S +PP +KRRRTS
Sbjct: 462 TGKSNSQQAPSNHVLSKSNTVPNLVTGFPTRSDNPPNEKRRRTS 505
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 536 PPRLDRSIAIFILRLLHWRDITGRSVE 616
P LD I +++ WR+ TG SVE
Sbjct: 912 PAELDNEIERLQMQIAEWRNRTGVSVE 938
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 109 ENTNARPDELTRQTTRSQDAKSPIQKKK-KKTRD 11
E + + + R++ S+D +SP +KKK KK++D
Sbjct: 475 EKKDKKHKKSKRKSEESEDGESPKKKKKSKKSKD 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,042
Number of Sequences: 5004
Number of extensions: 34088
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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