Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5624
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      34   0.019
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    31   0.10 
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   6.6  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 51  HAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
           H  C KC  C Q L E    + R+GK YC  DY
Sbjct: 279 HPQCFKCDTCSQNL-EHVGFYYREGKFYCHLDY 310


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 48  WHAACLKCQECRQFLDESCTCFVRDG--KTYCK 140
           WH+ C KC  C + LD S   F +D   + +CK
Sbjct: 44  WHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCK 76


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 112 KHVQDSSRNCRHSWHFRQAACHSRSGATRRMY 17
           K  Q   R CR  WH  +   + R  A RR+Y
Sbjct: 33  KPCQCGYRVCRFCWHHIKEDLNGRCPACRRLY 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,211
Number of Sequences: 5004
Number of extensions: 37122
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)