Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5624
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 72 4e-13
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 72 4e-13
Z80221-2|CAB02310.1| 405|Caenorhabditis elegans Hypothetical pr... 47 9e-06
X54355-1|CAA38240.1| 382|Caenorhabditis elegans lin-11 protein ... 47 9e-06
U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain fami... 46 3e-05
Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical p... 42 5e-04
Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical p... 42 5e-04
Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical p... 42 5e-04
Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical p... 42 5e-04
Z81068-11|CAB02981.1| 454|Caenorhabditis elegans Hypothetical p... 42 5e-04
EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform... 42 5e-04
Z81054-4|CAB02885.3| 321|Caenorhabditis elegans Hypothetical pr... 41 6e-04
L02877-1|AAA50614.1| 321|Caenorhabditis elegans homeoprotein pr... 41 6e-04
U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family ... 39 0.003
U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family ... 39 0.003
U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeo... 38 0.008
AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox ... 38 0.008
Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical pr... 37 0.013
U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative transc... 37 0.013
U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 36 0.030
U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 36 0.030
U80955-2|AAM97946.1| 181|Caenorhabditis elegans Mlp/crp family ... 35 0.040
U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily ass... 35 0.040
U20861-5|AAT92079.1| 256|Caenorhabditis elegans Temporarily ass... 35 0.040
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 35 0.053
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 35 0.053
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 35 0.053
Z81054-5|CAE17755.1| 313|Caenorhabditis elegans Hypothetical pr... 33 0.21
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 33 0.21
M20244-1|AAA28108.1| 313|Caenorhabditis elegans protein ( C.ele... 33 0.21
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 32 0.28
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 32 0.28
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 32 0.28
U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated p... 31 0.49
U40933-3|AAL27241.1| 85|Caenorhabditis elegans Temporarily ass... 31 0.49
AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein. 31 0.49
U72347-1|AAD12189.1| 101|Caenorhabditis elegans putative transc... 31 0.65
U58749-7|AAK18878.1| 84|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC024844-5|AAK29953.1| 156|Caenorhabditis elegans Hypothetical ... 29 3.5
Z81082-4|CAB03096.1| 176|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 28 4.6
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 71.7 bits (168), Expect = 4e-13
Identities = 32/63 (50%), Positives = 43/63 (68%)
Frame = +3
Query: 3 QIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR*VTY*AGRL 182
+I D+Y LRV P+LE+HA CLKC +C + LDE+ T FV++G+TYC+ DY R T R
Sbjct: 62 EISDRYFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFVKNGQTYCRDDYRRLFTTRCSRC 121
Query: 183 IAD 191
D
Sbjct: 122 HGD 124
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 71.7 bits (168), Expect = 4e-13
Identities = 32/63 (50%), Positives = 43/63 (68%)
Frame = +3
Query: 3 QIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR*VTY*AGRL 182
+I D+Y LRV P+LE+HA CLKC +C + LDE+ T FV++G+TYC+ DY R T R
Sbjct: 62 EISDRYFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFVKNGQTYCRDDYRRLFTTRCSRC 121
Query: 183 IAD 191
D
Sbjct: 122 HGD 124
>Z80221-2|CAB02310.1| 405|Caenorhabditis elegans Hypothetical
protein ZC247.3 protein.
Length = 405
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +3
Query: 6 IHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
I D+Y+ V WH +CL+C +CR + S TCF RDG CK D++R
Sbjct: 75 ILDRYVFTVLGKC-WHQSCLRCCDCRAPM--SMTCFSRDGLILCKTDFSR 121
>X54355-1|CAA38240.1| 382|Caenorhabditis elegans lin-11 protein
protein.
Length = 382
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +3
Query: 6 IHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
I D+Y+ V WH +CL+C +CR + S TCF RDG CK D++R
Sbjct: 52 ILDRYVFTVLGKC-WHQSCLRCCDCRAPM--SMTCFSRDGLILCKTDFSR 98
>U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain family
protein 6 protein.
Length = 287
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +3
Query: 6 IHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
I D+YI RV D +H +CL+C C+ L CF R G YC+ D+
Sbjct: 26 IKDRYIYRVMED-SYHESCLRCSCCQLSLSSFKKCFSRHGNIYCEHDH 72
Score = 31.1 bits (67), Expect = 0.65
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+HA C C C++ + V DG+ +C+ DY
Sbjct: 101 YHAQCFSCCSCQRPFNLGDEYHVFDGEVFCRNDY 134
>Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH AC CQ C Q L + C V+D + YC+R Y
Sbjct: 274 WHPACFTCQACEQLLVDLTYC-VKDNQIYCERHY 306
>Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH AC CQ C Q L + C V+D + YC+R Y
Sbjct: 311 WHPACFTCQACEQLLVDLTYC-VKDNQIYCERHY 343
>Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH AC CQ C Q L + C V+D + YC+R Y
Sbjct: 311 WHPACFTCQACEQLLVDLTYC-VKDNQIYCERHY 343
>Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH AC CQ C Q L + C V+D + YC+R Y
Sbjct: 219 WHPACFTCQACEQLLVDLTYC-VKDNQIYCERHY 251
>Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH AC CQ C Q L + C V+D + YC+R Y
Sbjct: 274 WHPACFTCQACEQLLVDLTYC-VKDNQIYCERHY 306
>Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH AC CQ C Q L + C V+D + YC+R Y
Sbjct: 311 WHPACFTCQACEQLLVDLTYC-VKDNQIYCERHY 343
>Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH AC CQ C Q L + C V+D + YC+R Y
Sbjct: 311 WHPACFTCQACEQLLVDLTYC-VKDNQIYCERHY 343
>Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH AC CQ C Q L + C V+D + YC+R Y
Sbjct: 219 WHPACFTCQACEQLLVDLTYC-VKDNQIYCERHY 251
>Z81068-11|CAB02981.1| 454|Caenorhabditis elegans Hypothetical
protein F25H5.1e protein.
Length = 454
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH AC CQ C Q L + C V+D + YC+R Y
Sbjct: 141 WHPACFTCQACEQLLVDLTYC-VKDNQIYCERHY 173
>EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform
protein.
Length = 656
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH AC CQ C Q L + C V+D + YC+R Y
Sbjct: 311 WHPACFTCQACEQLLVDLTYC-VKDNQIYCERHY 343
>Z81054-4|CAB02885.3| 321|Caenorhabditis elegans Hypothetical
protein F01D4.6a protein.
Length = 321
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 3 QIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
QI+D+YI R+ + +H C+KC C L E CF ++G+ YC + Y
Sbjct: 35 QIYDRYIYRM-DNRSYHENCVKCTICESPLAEK--CFWKNGRIYCSQHY 80
>L02877-1|AAA50614.1| 321|Caenorhabditis elegans homeoprotein
protein.
Length = 321
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 3 QIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
QI+D+YI R+ + +H C+KC C L E CF ++G+ YC + Y
Sbjct: 35 QIYDRYIYRM-DNRSYHENCVKCTICESPLAEK--CFWKNGRIYCSQHY 80
>U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform a protein.
Length = 95
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 45 EWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
+WH C KC C + LD SCT + + YCK+ + R
Sbjct: 30 KWHKFCFKCNMCNKLLD-SCTVAPHEAELYCKQCHGR 65
>U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform b protein.
Length = 113
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 45 EWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
+WH C KC C + LD SCT + + YCK+ + R
Sbjct: 30 KWHKFCFKCNMCNKLLD-SCTVAPHEAELYCKQCHGR 65
>U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeobox
protein 14 protein.
Length = 351
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 3 QIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+I D+++ +V +H++CL+C C+ L TCF+R+ YC+ +
Sbjct: 54 KIRDRFVSKVNGRC-YHSSCLRCSTCKDEL--GATCFLREDSMYCRAHF 99
>AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox
protein CEH-14 protein.
Length = 351
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 3 QIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+I D+++ +V +H++CL+C C+ L TCF+R+ YC+ +
Sbjct: 54 KIRDRFVSKVNGRC-YHSSCLRCSTCKDEL--GATCFLREDSMYCRAHF 99
>Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical
protein C40H5.5 protein.
Length = 409
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
+H CL+CQ C + S C+VRDG C+ D+ +
Sbjct: 130 YHNNCLRCQMCDIPFEYSDKCYVRDGVFLCRADHAK 165
>U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative
transcription factor TTX-3 protein.
Length = 409
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
+H CL+CQ C + S C+VRDG C+ D+ +
Sbjct: 130 YHNNCLRCQMCDIPFEYSDKCYVRDGVFLCRADHAK 165
>U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative
transcription factor LIM-4 protein.
Length = 355
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 3 QIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
QI D++ L + +H CL+C C L C F +D YCK Y R
Sbjct: 104 QIQDKFFLSI-DGRNYHENCLQCSTCENPLSNKC--FYKDKTFYCKGCYFR 151
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 24 LRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+R A + +H AC C +C++ L +++G CK+ +
Sbjct: 181 VRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHF 222
>U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family
protein 4 protein.
Length = 355
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 3 QIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
QI D++ L + +H CL+C C L C F +D YCK Y R
Sbjct: 104 QIQDKFFLSI-DGRNYHENCLQCSTCENPLSNKC--FYKDKTFYCKGCYFR 151
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 24 LRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+R A + +H AC C +C++ L +++G CK+ +
Sbjct: 181 VRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHF 222
>U80955-2|AAM97946.1| 181|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform c protein.
Length = 181
Score = 35.1 bits (77), Expect = 0.040
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 45 EWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
+WH C KC C + LD S +C + +CK+ + R
Sbjct: 30 KWHKFCFKCSMCNKLLD-SMSCCEHQAQLFCKQCHCR 65
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 51 HAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
+ +C K C + LD SCT + + YCK+ + R
Sbjct: 100 NVSCFKTYMCNKLLD-SCTVAPHEAELYCKQCHGR 133
>U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily
assigned gene nameprotein 327, isoform a protein.
Length = 256
Score = 35.1 bits (77), Expect = 0.040
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
+H C C EC Q E ++G+TYCKRD+ R
Sbjct: 97 FHIECFTCAECNQPFGED-GFHEKNGQTYCKRDFFR 131
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH C EC L + F R+G+ +C+ DY
Sbjct: 38 WHPEHYTCCECGAELGQR-PFFERNGRAFCEEDY 70
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH C CQ C + + F +G C+R Y
Sbjct: 156 WHPDCFVCQHCGVSFN-GASFFEHNGAPLCERHY 188
>U20861-5|AAT92079.1| 256|Caenorhabditis elegans Temporarily
assigned gene nameprotein 327, isoform b protein.
Length = 256
Score = 35.1 bits (77), Expect = 0.040
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR 155
+H C C EC Q E ++G+TYCKRD+ R
Sbjct: 167 FHIECFTCAECNQPFGED-GFHEKNGQTYCKRDFFR 201
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
WH C EC L + F R+G+ +C+ DY
Sbjct: 108 WHPEHYTCCECGAELGQR-PFFERNGRAFCEEDY 140
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 34.7 bits (76), Expect = 0.053
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 6 IHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+H +L +A L WH C KC EC L GK C RDY
Sbjct: 138 LHSGQVL-LALGLSWHVYCFKCSECSAVLHGE--YMSHHGKPLCLRDY 182
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 34.7 bits (76), Expect = 0.053
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 6 IHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+H +L +A L WH C KC EC L GK C RDY
Sbjct: 124 LHSGQVL-LALGLSWHVYCFKCSECSAVLHGE--YMSHHGKPLCLRDY 168
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 34.7 bits (76), Expect = 0.053
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 6 IHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+H +L +A L WH C KC EC L GK C RDY
Sbjct: 138 LHSGQVL-LALGLSWHVYCFKCSECSAVLHGE--YMSHHGKPLCLRDY 182
>Z81054-5|CAE17755.1| 313|Caenorhabditis elegans Hypothetical
protein F01D4.6b protein.
Length = 313
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+H C+KC C L E CF ++G+ YC + Y
Sbjct: 41 YHENCVKCTICESPLAEK--CFWKNGRIYCSQHY 72
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+H C +C+ CRQ L ++ F ++ K YC R Y
Sbjct: 297 YHPNCFRCETCRQLLVDNIYFFYKN-KYYCGRHY 329
>M20244-1|AAA28108.1| 313|Caenorhabditis elegans protein (
C.elegans mec-3 geneencoding differentiation of the six
touch receptor neurons,complete cds. ).
Length = 313
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+H C+KC C L E CF ++G+ YC + Y
Sbjct: 41 YHENCVKCTICESPLAEK--CFWKNGRIYCSQHY 72
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 39 DLEWHAACLKCQECRQFLDESCT---CFVRDGKTYCKRDYT 152
+L +H AC KC C+ L T VRDG+ +C+ Y+
Sbjct: 819 NLFYHLACFKCYVCKTSLGSGATGADVRVRDGRLHCQTCYS 859
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform a protein.
Length = 1004
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 39 DLEWHAACLKCQECRQFLDESCT---CFVRDGKTYCKRDYT 152
+L +H AC KC C+ L T VRDG+ +C+ Y+
Sbjct: 955 NLFYHLACFKCYVCKTSLGSGATGADVRVRDGRLHCQTCYS 995
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform c protein.
Length = 1099
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 39 DLEWHAACLKCQECRQFLDESCT---CFVRDGKTYCKRDYT 152
+L +H AC KC C+ L T VRDG+ +C+ Y+
Sbjct: 1050 NLFYHLACFKCYVCKTSLGSGATGADVRVRDGRLHCQTCYS 1090
>U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated
protein 97 protein.
Length = 348
Score = 31.5 bits (68), Expect = 0.49
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR*VTY*AGRL---IADR-IQNTNCD 215
W C C C + LD+ + D K CKR Y R T R+ + DR ++N
Sbjct: 283 WCVKCFSCSFCDKKLDQKTKFYEFDMKPTCKRCYDRFPTELKKRISESLKDRDVENQRRS 342
Query: 216 LSP 224
+SP
Sbjct: 343 MSP 345
>U40933-3|AAL27241.1| 85|Caenorhabditis elegans Temporarily
assigned gene nameprotein 291 protein.
Length = 85
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 45 EWHAACLKCQE--CRQFLDESCTCFVRDGKTYCKRDY 149
+WH CL+C+ C++ L + + R+GK YC R Y
Sbjct: 23 DWHRPCLRCENEACKKTL-AAGSHSEREGKPYCNRCY 58
>AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein.
Length = 348
Score = 31.5 bits (68), Expect = 0.49
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYTR*VTY*AGRL---IADR-IQNTNCD 215
W C C C + LD+ + D K CKR Y R T R+ + DR ++N
Sbjct: 283 WCVKCFSCSFCDKKLDQKTKFYEFDMKPTCKRCYDRFPTELKKRISESLKDRDVENQRRS 342
Query: 216 LSP 224
+SP
Sbjct: 343 MSP 345
>U72347-1|AAD12189.1| 101|Caenorhabditis elegans putative
transcription factor LIM-6 protein.
Length = 101
Score = 31.1 bits (67), Expect = 0.65
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 48 WHAACLKCQECRQFLDESCTCFVRDGKTYCKRDY 149
+HA C C C++ + V DG+ +C+ DY
Sbjct: 1 YHAQCFSCCSCQRPFNLGDEYHVFDGEVFCRNDY 34
>U58749-7|AAK18878.1| 84|Caenorhabditis elegans Hypothetical
protein B0496.7 protein.
Length = 84
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 45 EWHAACLKC--QECRQFLDESCTCFVRDGKTYCKRDY 149
+WH CLKC + C + L + +GK YC R Y
Sbjct: 23 DWHRPCLKCANKACGKTLSAG-SHSEHEGKPYCNRCY 58
>AC024844-5|AAK29953.1| 156|Caenorhabditis elegans Hypothetical
protein Y65B4A.7 protein.
Length = 156
Score = 28.7 bits (61), Expect = 3.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 39 DLEWHAACLKCQECR 83
++ WH AC KC+ CR
Sbjct: 106 NVHWHMACFKCKACR 120
>Z81082-4|CAB03096.1| 176|Caenorhabditis elegans Hypothetical
protein F42G4.3b protein.
Length = 176
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +3
Query: 30 VAPDLEWHAACLKCQECRQFLD---ESCTCFVRDGKTYCK 140
VA D +H C KC++C L E C+ D CK
Sbjct: 124 VAMDKSFHVDCYKCEDCGMQLSSKLEGQGCYPIDNHLLCK 163
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical
protein F42G4.3a protein.
Length = 603
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +3
Query: 30 VAPDLEWHAACLKCQECRQFLD---ESCTCFVRDGKTYCK 140
VA D +H C KC++C L E C+ D CK
Sbjct: 551 VAMDKSFHVDCYKCEDCGMQLSSKLEGQGCYPIDNHLLCK 590
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,419,375
Number of Sequences: 27780
Number of extensions: 204103
Number of successful extensions: 485
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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