Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5624
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   1.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.6  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.6  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 442 YPKHSHLQYYNLK*KYHNYVIML*YIDIKIYFSFSDSVQTPLG 314
           Y  +++   YN K  Y NY+I +  I + +     +    P+G
Sbjct: 91  YSNYNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGNFPPRPMG 133


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 85  CRHSWHFRQAACHSRSGATRRMYWSWI 5
           C  + HFR  + H+ S   R+++ +W+
Sbjct: 332 CVLNVHFRSPSTHNMSPWVRQVFLNWM 358


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 415 YNLK*KYHNYVIML*YIDIKIYFSFSDSVQTPLG 314
           YN K  Y NY+I +  I + +   + +    P+G
Sbjct: 111 YNKKLYYKNYIINIEQIPVPVPVYYGNFPPRPMG 144


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 415 YNLK*KYHNYVIML*YIDIKIYFSFSDSVQTPLG 314
           YN K  Y NY+I +  I + +   + +    P+G
Sbjct: 336 YNKKLYYKNYIINIEQIPVPVPVYYGNFPPRPMG 369


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 415 YNLK*KYHNYVIML*YIDIKIYFSFSDSVQTPLG 314
           YN K  Y NY+I +  I + +     +    P+G
Sbjct: 341 YNKKLYYKNYIINIEQIPVPVPIYCGNFPPRPMG 374


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 241 CRT*LSGDKSQLVFC 197
           C+  +SGDK+   FC
Sbjct: 132 CKEGISGDKTTKTFC 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,716
Number of Sequences: 438
Number of extensions: 2920
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)