Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5621
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 35 0.011
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 29 0.42
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 0.96
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 28 1.3
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 1.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 1.7
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 3.9
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.1
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 5.1
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 6.8
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.0
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 25 9.0
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 34.7 bits (76), Expect = 0.011
Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 11/176 (6%)
Frame = +1
Query: 130 LECGCRKT-------CRNPAPNCRAMCITGCFCEEGQV-NNDNGVCVNLADCPQAASAYK 285
L C C +T C P P+C +C+ C QV +N + CP +
Sbjct: 620 LPCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPCPYFVKK-R 678
Query: 286 LQTTEPRFDGGKCPQNEEYKFCEPCNRTCENPFPVCPAQCARGCFCKDGLVRDKDGKCVE 465
+ + C E + E CN+ C C C+ ++ + +
Sbjct: 679 CLCGKHILENQPC-YRENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCKKECGKRRMY 737
Query: 466 LEQ-CSNLKHL--KLGENYKQPIPSRVNCGPYQVYKKCGTCDKTCSNPNPVCNQTC 624
E C + H E P V+C ++ KK TCD + NP+P +C
Sbjct: 738 CEHVCQSPCHAGHPCDERIPCKAPLEVSCECGRIRKKV-TCDASYDNPDPQHKVSC 792
Score = 28.7 bits (61), Expect = 0.73
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Frame = +1
Query: 109 CRANERFLECGCRKTCRNPAPNCRAMCITGCFCEEGQVNNDNGVCVNLADCPQAASAYKL 288
C ANE ++ C + P C +C C Q N C + Q A +
Sbjct: 511 CTANE--VQVTCEQLQNGFIPTCERLCTILLSCGRHQCNKK---CCSGYSKAQTRLARRP 565
Query: 289 QTTEPRFDGGKCPQNEEYKFCEPCNR--TCENPFPVCPAQCARG 414
+ + R+ EE+ PCN+ +C N F C C RG
Sbjct: 566 KGAKLRYHLLTEEFEEEHICFRPCNKKLSCGNHF--CQHMCHRG 607
Score = 27.9 bits (59), Expect = 1.3
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Frame = +1
Query: 145 RKTCRNPAPNCRAMC--ITGC--FCEEGQVNNDNGVCVNLADCPQAASAYKLQTTEPRFD 312
RK+C +P P C +C + C C+ G C P +A ++Q T +
Sbjct: 465 RKSCSDPIPTCENICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQLQ 524
Query: 313 GGKCPQNEE----YKFC--EPCNRTCENPFPVCPAQCAR 411
G P E C CN+ C + + + AR
Sbjct: 525 NGFIPTCERLCTILLSCGRHQCNKKCCSGYSKAQTRLAR 563
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 29.5 bits (63), Expect = 0.42
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 349 CEPCNRTCENPFPVCPAQCARGCFCKDGLVRDKDGKCVELEQCSNLKHLKLG 504
CE ++ E F +C AQ + FC+DG+++ ++L+ SNL+ +K G
Sbjct: 202 CEKSDKAIEKTF-LC-AQLFK-TFCEDGVLQTFQPGFIQLDIASNLQEIKKG 250
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 0.96
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 266 KPLPHTSCRQQSHASMEGNALKT-RSTNSASPVTGLARIRSRCVQRS---APEDVS 421
KP+P T + SHA + N T R+ S ++ SR V++S AP D S
Sbjct: 129 KPIPKTKSKPTSHAPVSDNVSSTFRNATRKSKKPSASKDTSRGVRKSKAGAPSDPS 184
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 428 SLQKHPRAHCAGHTGNGFSQVLLQGSQNLYSSF*GHFPPSKRGSVVCSLYAEAA*GQSAK 249
S Q +C + GF V++QGS + Y F F ++ VCS+ + Q A+
Sbjct: 493 SAQGKQLRYCGNNAAEGFDDVVIQGSLSDY-KFACFFTKGEKVVGVCSIMKDPVVSQCAR 551
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 506 SPSLRCFKFEHCSNSTHFPSLSLTRPSLQKHPRAHCAGHTGN 381
S R E CS+ + P L+L P + P AGHT +
Sbjct: 270 SEHARSVASETCSSDPNNPKLNLKAPVFSEAPIREYAGHTAD 311
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = +2
Query: 290 RQQSHASMEGNA-LKTRSTNSASPVTGLARIRSRCVQR------SAPEDVSVKTVW*GTK 448
R++S ++ G++ TRST S +P+T L +R + R P+++ + W G K
Sbjct: 620 RKKSKYNLPGSSGFMTRSTKSTNPMTPLNWLRGISMGRLGNADWEVPQNLGEELSWIGQK 679
Query: 449 TENV 460
NV
Sbjct: 680 YSNV 683
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 244 VNLADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENPFPVCPAQ 402
++LAD Y + T G P+N +Y P N++ + P+CP +
Sbjct: 123 IDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFNQS-SHYHPMCPIE 174
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 461 WNWNNAQT*NILSLEKTTNSQSLPASTAVPIKC 559
W NA T + EK + SLP+ PI C
Sbjct: 199 WRLANATTLLLRKAEKDSRGHSLPSVLTQPINC 231
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 28 IMSSKSIFICLSLCYIVNEVYG-QVATLC 111
+M SK ++ LC I+ E Y +V+ LC
Sbjct: 34 VMQSKGLYSMEELCSIIQEAYAPRVSVLC 62
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 547 PYQVYKKCGTCDKTCSNPNPVCNQTC 624
PYQ + K G C+ + +NP+ C
Sbjct: 9 PYQAFSKVGKCEISQTNPSFSSGMRC 34
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
Frame = +1
Query: 43 SIFICLSLCYIVN---EVYG 93
SIF+ LS+CY +N +VYG
Sbjct: 1302 SIFLILSICYTINICVKVYG 1321
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 586 FCHRCHTSCTLDRD 545
F H HTSCT+D D
Sbjct: 376 FMHGGHTSCTIDMD 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,254
Number of Sequences: 5004
Number of extensions: 57651
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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