Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5620
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221...    31   0.95 
03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810...    29   3.9  
04_04_1108 + 30961600-30962013,30963131-30964465                       29   5.1  
03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092...    28   8.9  
02_01_0434 + 3158637-3159319,3159460-3159576,3160064-3160226,316...    28   8.9  

>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
            17722189-17722332,17722415-17722722,17723433-17723568,
            17723748-17723841,17723976-17724073,17724951-17725004,
            17725704-17726150,17726227-17726393,17726540-17726663,
            17726751-17726837,17727000-17727056,17727492-17727560,
            17727664-17727811,17727893-17728116,17728842-17728958,
            17729649-17729742,17730573-17730640,17733278-17733334,
            17733412-17733511,17733638-17733674,17734077-17734200,
            17735254-17735322,17735371-17735410,17735905-17735993,
            17736849-17736953,17737033-17737104,17737814-17737936,
            17738049-17738117,17738966-17739059,17739145-17739231,
            17740184-17740351,17740436-17740552,17741484-17741590,
            17741671-17741803,17742564-17742667,17743504-17743629,
            17744148-17744216,17744996-17745064,17745278-17745358,
            17745444-17745533,17745896-17746000,17747803-17747873,
            17748320-17748461,17749266-17749330,17750081-17750168,
            17750236-17750325,17750437-17750673,17751064-17751170,
            17751625-17751832,17752376-17752546
          Length = 2366

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 222  LFGPRIAARCLHLQFLSPTKSFRRLSMTHYISKSL*LILKKDPAIVSNPACE 377
            LF P+      H+Q L PT   R+ S+ H    +L  ++++DPA + N   E
Sbjct: 1096 LFAPQAVPVHSHVQSLIPTLYSRQPSLRHLAVSTLRHLIERDPAAMINQNIE 1147


>03_05_0100 -
           20779387-20779641,20779824-20780629,20780757-20781011,
           20781107-20781221,20781301-20781353,20781517-20781777,
           20782804-20782854,20783081-20783329,20784765-20784990,
           20785968-20786132
          Length = 811

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 188 EAAYQREEPRHVGTD*YTSSPN 123
           +AAY RE P H+    Y S+PN
Sbjct: 353 QAAYLREHPEHIANTFYRSTPN 374


>04_04_1108 + 30961600-30962013,30963131-30964465
          Length = 582

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 481 ENINPLGQSCSKDQPSQQLRKLLHVK 404
           E IN L Q C K QP +    L+HV+
Sbjct: 285 EQINTLHQVCDKQQPGENSSDLVHVE 310


>03_03_0021 +
           13808274-13808384,13809036-13809200,13809249-13809278,
           13809279-13809397,13809696-13809770,13812071-13812146,
           13813224-13813289,13813364-13813462,13814072-13814174,
           13814338-13814411
          Length = 305

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 265 NCKCRQRAAMRGPNKCEERIEEVSIERQLISVKS 164
           NC    R  ++ P   + RIE+V++ER L++  S
Sbjct: 151 NCGNMLRECIKYPTLTKVRIEDVAVERSLVAAAS 184


>02_01_0434 +
           3158637-3159319,3159460-3159576,3160064-3160226,
           3160394-3160600
          Length = 389

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 673 HCPRRHYFLAKPAQPQSP 726
           HC RRH F A P  P  P
Sbjct: 14  HCSRRHLFFAPPPPPPPP 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,292,408
Number of Sequences: 37544
Number of extensions: 359173
Number of successful extensions: 1075
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)