Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5620
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.1  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 168 RATSRRYGLVYVFTKLPSSS*NKSLFCLPSVCDEQPPKIINKTKLRN 28
           R+ SRRY   +  + +   S + S    PS+   QP +  NK K +N
Sbjct: 18  RSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKN 64


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 398 WDLGPFSFASWIADD 354
           W+LGP    SW++ D
Sbjct: 104 WELGPMLCDSWVSLD 118


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 275 WRQELQMQAASCYARS 228
           +RQE+  Q  SC ARS
Sbjct: 70  YRQEVHAQVYSCLARS 85


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +2

Query: 545 RKYRNFHNQSPLNQRSRRSHRFLKQYHPSPPSTSLYSGITTNAIAPGAITSLQNLLNPKV 724
           R+ +     SP+   S+ SH  L+    S  S SL + +    +   A+ S  NLLN   
Sbjct: 355 REAQKSQKPSPVTGASK-SHGDLELRQRS--SKSLLANVLD--LEDNALASHNNLLNNVY 409

Query: 725 RVPGP 739
             PGP
Sbjct: 410 STPGP 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,727
Number of Sequences: 438
Number of extensions: 4169
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)