Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5617
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.8  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   7.7  

>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 457 KRQDF*KDYVLKIGRENDVNFLVEIISHKVDV 362
           +R+D  +  ++ I ++ND+N   E +S ++DV
Sbjct: 66  RRRDQKRKQLISIKQDNDLNVSSERLSRRIDV 97


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 15  GSTCEHGNLPQFFLREY-LSMFRKKNQVNY 101
           G   +  N P+ F R++ LS+F K+   NY
Sbjct: 479 GLKAQRHNKPKLFFRKFNLSLFDKQKYANY 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,414
Number of Sequences: 5004
Number of extensions: 31943
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)