Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5614
(414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0078 + 16291254-16291532,16291654-16291725 32 0.21
01_01_0692 - 5351700-5352413 31 0.48
02_01_0165 + 1152520-1152582,1152995-1153060,1153688-1154065 29 1.1
04_03_0786 - 19621674-19621960,19623152-19623193,19623679-19624339 28 3.4
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 27 4.5
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 27 5.9
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937 27 7.8
05_01_0187 + 1349725-1352238 27 7.8
01_06_0743 + 31622683-31623723 27 7.8
01_06_0588 - 30440817-30441203,30441323-30441463,30441598-30442404 27 7.8
>06_03_0078 + 16291254-16291532,16291654-16291725
Length = 116
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 414 TTHYRANWVPGPPSSGKRVREDIAWVGLP-QSGST 313
TT + A W P PPS G R R AW P +GST
Sbjct: 49 TTRFAA-WSPPPPSGGARSRGFAAWASAPGPAGST 82
>01_01_0692 - 5351700-5352413
Length = 237
Score = 30.7 bits (66), Expect = 0.48
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 190 HQVKGVLSSTTALSGHMPLPRSAVITSSTLLAS--NGFPRPSTSRSTLWEAYPRYVFPYT 363
HQ G ++ + G + R +SS L AS + PR T +Y VFP+
Sbjct: 54 HQPHGGAAAVAVMGGGAGVARGGDSSSSPLSASFFHHNPRDVEFSCTTTPSYAPGVFPFR 113
Query: 364 LATRGGARY 390
RGG+R+
Sbjct: 114 FRGRGGSRH 122
>02_01_0165 + 1152520-1152582,1152995-1153060,1153688-1154065
Length = 168
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 336 LPTLCLPLHACHSRGGPVPNSPYS 407
LP+ C PLH H PV N P S
Sbjct: 101 LPSGCRPLHTSHPLSAPVANRPLS 124
>04_03_0786 - 19621674-19621960,19623152-19623193,19623679-19624339
Length = 329
Score = 27.9 bits (59), Expect = 3.4
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -1
Query: 384 GPPSSGKRVREDIAWVGLPQSGSTC*RSREPVRCQQRRTSYYG-----RPWERHMSAKSS 220
G G E W + + R PV+C++R ++ G R WER +S+ SS
Sbjct: 40 GRGGGGGAAAEPTKWAAVAEYCRRHGLERGPVQCRKRWSNLAGDYKKIREWERSLSSPSS 99
Query: 219 S 217
S
Sbjct: 100 S 100
>10_08_0573 +
18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 27.5 bits (58), Expect = 4.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 320 PLCGRPTHAMSSLTRLPLEGGP 385
P+ +P+H + SLT++ +EG P
Sbjct: 782 PMLEQPSHKLRSLTKITVEGSP 803
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 337 YPRYVFPYTLATRGGARYPIRPI 405
YP+Y F Y R GA +P RPI
Sbjct: 136 YPQYHFAYLEVKRIGAVFPRRPI 158
>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
Length = 853
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 320 PLCGRPTHAMSSLTRLPLEGG 382
P+C + THAM S+ L + GG
Sbjct: 239 PVCFKETHAMCSMVGLDVNGG 259
>05_01_0187 + 1349725-1352238
Length = 837
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 320 PLCGRPTHAMSSLTRLPLEGG 382
P+C + THAM S+ L + GG
Sbjct: 202 PVCFKETHAMCSMVGLDVNGG 222
>01_06_0743 + 31622683-31623723
Length = 346
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 354 EDIAWVGLPQSGSTC*RSREPVRCQQRRTS 265
+D AW+G P GS R R R QQ++T+
Sbjct: 137 DDDAWLGYPADGSGRGRPRPYPRGQQQQTT 166
>01_06_0588 - 30440817-30441203,30441323-30441463,30441598-30442404
Length = 444
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 244 LPRSAVITSSTLLASNGFPRPSTSRSTLWEAYPRYVFPYTL 366
LP + ++T +LL + R ST ST W R++FPYTL
Sbjct: 19 LPENVLVTILSLLRLDEAAR-STVLSTRW----RHLFPYTL 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,253
Number of Sequences: 37544
Number of extensions: 218036
Number of successful extensions: 603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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