Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5614
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 273 YAVGI*RVPATFNKSIHFVGGLPTLCL 353
           YAV   ++P  FN+S H    + T C+
Sbjct: 833 YAVLTRKIPEAFNESKHIGFTMYTTCV 859


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 273 RTSYYGRPWERHMSAKS 223
           R + YG P+ RHM  K+
Sbjct: 485 RLNVYGLPFIRHMDKKA 501



 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 189 HLKIKLKNKTNR 154
           H +IKLKN+T R
Sbjct: 778 HFEIKLKNQTAR 789


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,821
Number of Sequences: 438
Number of extensions: 2165
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)