Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5611
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    29   0.47 
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    26   5.8  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   5.8  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    26   5.8  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 429 NKCNETSSVCDRKRSGRPRSVRMEKVIKAVRERIRRNPVRKQNILSREMKIAP 271
           N     S V  RK+     S  MEK  KA++++ RR P + +  L+R + I P
Sbjct: 70  NVMKRPSVVKSRKKGSENISNFMEKT-KAIKQKSRREPSKFERSLARPLCITP 121


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 627 YMIAHWVFSIWRQYIAQNFAILKWSRVIK 541
           YM  +W   IW  Y+  +  + KWS VI+
Sbjct: 620 YMYDNW--RIWENYMLISVDVNKWSEVIR 646


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = -2

Query: 657 LPLNLEICHFY------MIAHWVFSIWRQYIAQ 577
           +P+N ++CHF+      ++ +WVF + R+   Q
Sbjct: 37  VPINDKVCHFFVFFLLTLVFYWVFDLSRRRATQ 69


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 114 TKFFYDLPLRTVSVVVSILPPYSLLNYQLRNKQYISYRLQVLSHL 248
           +KF  DLP+R VS +  +L    LL  +++    I   L +LS++
Sbjct: 301 SKFMNDLPVREVSGIGRVL-EQQLLGLEIKTCGDIQRNLVILSYI 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,754
Number of Sequences: 5004
Number of extensions: 59742
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)