Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5611
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1816 + 40086972-40087820,40088324-40088459,40088544-400886...    32   0.49 
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    28   6.0  
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246...    28   6.0  
01_01_0014 + 84379-84600,84737-84830,84935-85086,85212-85299,853...    28   7.9  

>01_06_1816 +
           40086972-40087820,40088324-40088459,40088544-40088640,
           40088742-40088842,40089149-40089312,40089407-40089595,
           40089904-40090025,40090200-40090242
          Length = 566

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -2

Query: 234 LAAYKRCTAYFLTDNLKENRVVKSKQLL--KRYAKGGHRKILFTDENFLQLSNILTNKMT 61
           +AA++ C   +L  +L  + +  + Q L    +AK  H K+  T    LQL+ +L   +T
Sbjct: 424 MAAFQICAQVWLASSLLADGLAVAGQALLASAFAKKDHYKVAVTTARVLQLAVVLGVGLT 483

Query: 60  AFM 52
           AF+
Sbjct: 484 AFL 486


>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 410 EVSLHLLIAPVHKHFTNTERMESLKNCI 493
           E S  +L+A +  H TN  R+E LKN I
Sbjct: 595 EKSAIILLAFLSSHLTNVRRLEQLKNLI 622


>01_05_0788 +
           25223373-25223405,25224285-25224373,25224496-25224624,
           25224710-25224766,25224844-25224916,25225509-25225667,
           25226755-25226904,25227013-25227268,25227358-25227479,
           25227531-25227599,25227653-25227739,25227842-25227930,
           25228168-25228224,25229162-25229258,25229348-25229506
          Length = 541

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 156 VVSILPPYSLLNYQLRNKQY--ISYRLQVLSHLLKYA 260
           ++S +P Y LLN+ L    Y  ISYR+  L+ +LK A
Sbjct: 468 LLSFIPGYPLLNFMLATAIYLLISYRVFELTGVLKSA 504


>01_01_0014 +
           84379-84600,84737-84830,84935-85086,85212-85299,
           85348-86681,87291-87398,87500-87583
          Length = 693

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 490 HLAPYLLCVMQSQRFGSLYHPTPF*YRKIL 579
           HL+   +C+ + QR   ++HP+ F Y+++L
Sbjct: 150 HLSSTKMCLSRCQRSRFVHHPSSFSYKRML 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,495,769
Number of Sequences: 37544
Number of extensions: 343006
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)