Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5611
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    46   2e-05
AC103567-10|AAL35727.1|  159|Caenorhabditis elegans Hypothetical...    30   1.7  
Z81039-3|CAB02775.1|  325|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Y12543-1|CAA73142.1|  897|Caenorhabditis elegans VPS34 homologue...    27   9.3  
U97190-7|AAF23185.1|  650|Caenorhabditis elegans Related to yeas...    27   9.3  
U97190-5|AAV34807.1|  897|Caenorhabditis elegans Related to yeas...    27   9.3  
U97190-3|AAF23184.1|  901|Caenorhabditis elegans Related to yeas...    27   9.3  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/42 (47%), Positives = 28/42 (66%)
 Frame = -2

Query: 228 AYKRCTAYFLTDNLKENRVVKSKQLLKRYAKGGHRKILFTDE 103
           AYK+ T  FL++  K  R  ++  LL+R+  G HRK+LFTDE
Sbjct: 180 AYKKSTCQFLSEAAKIKRKDRAMNLLRRFRNGAHRKVLFTDE 221



 Score = 31.5 bits (68), Expect = 0.57
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 103 EFFTIEQHFNEQNDRIYAQS 44
           + F IEQ FN QNDR+YA++
Sbjct: 222 KIFCIEQSFNTQNDRVYAKT 241


>AC103567-10|AAL35727.1|  159|Caenorhabditis elegans Hypothetical
           protein Y51F10.1 protein.
          Length = 159

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 23/98 (23%), Positives = 41/98 (41%)
 Frame = -2

Query: 396 RKRSGRPRSVRMEKVIKAVRERIRRNPVRKQNILSREMKIAPRTMSRILKDDLGLAAYKR 217
           +K SGRP  +      K  R          +      + ++  T+ R+L     +   K 
Sbjct: 52  KKSSGRPPLLSDRDKRKICRRAFNSTVTCSKIKREMNLPVSVETVRRVLSKSQFIKRRKL 111

Query: 216 CTAYFLTDNLKENRVVKSKQLLKRYAKGGHRKILFTDE 103
             A F+T+  ++NR+    Q  K   +   R+I+F+DE
Sbjct: 112 RKAPFITEKHRQNRI----QFAKINQRTNWRQIIFSDE 145


>Z81039-3|CAB02775.1|  325|Caenorhabditis elegans Hypothetical
           protein C25D7.4 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 126 YDLPLRTVSVVVSILPPYSLLNYQLRNKQYISYRLQVLSHLLKYATWF*VLSSSPEIKYF 305
           +++ L T +V  ++     LLN    N   I Y +Q ++H  + A  F   +++  + YF
Sbjct: 239 FEINLETFTVADAVKIKNILLNSANFNYCKIEYSMQFVAHRFEVARLFQPSNTNGNLDYF 298

Query: 306 AF 311
           A+
Sbjct: 299 AY 300


>Y12543-1|CAA73142.1|  897|Caenorhabditis elegans VPS34 homologue
           protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 543 LSPYSIL---ISQNFVQCIGAKLRKPNEQSYK 629
           L+PY +L   + Q FVQCI +K  +  ++ YK
Sbjct: 674 LTPYLVLSTGVGQGFVQCIKSKPLRAIQEQYK 705


>U97190-7|AAF23185.1|  650|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 34, isoform b
           protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 543 LSPYSIL---ISQNFVQCIGAKLRKPNEQSYK 629
           L+PY +L   + Q FVQCI +K  +  ++ YK
Sbjct: 427 LTPYLVLSTGVGQGFVQCIKSKPLRAIQEQYK 458


>U97190-5|AAV34807.1|  897|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 34, isoform c
           protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 543 LSPYSIL---ISQNFVQCIGAKLRKPNEQSYK 629
           L+PY +L   + Q FVQCI +K  +  ++ YK
Sbjct: 674 LTPYLVLSTGVGQGFVQCIKSKPLRAIQEQYK 705


>U97190-3|AAF23184.1|  901|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 34, isoform a
           protein.
          Length = 901

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 543 LSPYSIL---ISQNFVQCIGAKLRKPNEQSYK 629
           L+PY +L   + Q FVQCI +K  +  ++ YK
Sbjct: 678 LTPYLVLSTGVGQGFVQCIKSKPLRAIQEQYK 709


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,909,462
Number of Sequences: 27780
Number of extensions: 333376
Number of successful extensions: 859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)