Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5609
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 101 7e-23
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 64 2e-11
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 64 2e-11
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 51 2e-07
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 50 2e-07
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 44 2e-05
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 43 5e-05
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 32 0.064
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 31 0.15
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 29 0.78
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 27 1.8
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 26 5.5
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp... 26 5.5
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 7.3
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 25 9.7
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 9.7
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 101 bits (243), Expect = 7e-23
Identities = 46/61 (75%), Positives = 54/61 (88%)
Frame = +3
Query: 3 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGDKKAK 182
+VA++VYDITN NSF T KWI+DVR ERG DVII+LVGNKTDL+DKRQV+ EEG+KKAK
Sbjct: 85 SVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAK 144
Query: 183 E 185
E
Sbjct: 145 E 145
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/63 (46%), Positives = 44/63 (69%)
Frame = +1
Query: 184 KLNVMFIETSAKAGYNVKQLFRRVAAALPGMDSAENKPPEDMHEVILRQSPGDNKEQDSS 363
+L +M +ETSAKAG+NVK LFR++A LPGM++ E + + M +V ++ P +N +SS
Sbjct: 145 ELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQSTQ-MIDVSIQ--PNEN---ESS 198
Query: 364 CVC 372
C C
Sbjct: 199 CNC 201
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 64.1 bits (149), Expect = 2e-11
Identities = 27/59 (45%), Positives = 41/59 (69%)
Frame = +3
Query: 9 AVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGDKKAKE 185
AV+VYD+TN +SF + S W+ D+R S + ++L G+K+DL ++RQVSTEE + E
Sbjct: 89 AVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSE 147
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 63.7 bits (148), Expect = 2e-11
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +3
Query: 9 AVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGDKKAKE 185
A++VYDIT +SF +W+ ++R S+++IMLVGNKTDL R VSTEE A E
Sbjct: 86 ALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAE 144
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +3
Query: 12 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGDKKAKE 185
+++YD+T+ SF W +V +V +L+GNK D D+RQVS E+G A E
Sbjct: 86 LLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADE 143
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/64 (35%), Positives = 39/64 (60%)
Frame = +3
Query: 9 AVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGDKKAKET 188
A+VVYDIT A S + WI +++ + ++I L GNK DL+ +R+ + E+ D +A
Sbjct: 91 AIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERR-AVEKADAEAYAA 149
Query: 189 ERDV 200
E ++
Sbjct: 150 EANL 153
Score = 33.1 bits (72), Expect = 0.036
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 190 NVMFIETSAKAGYNVKQLFRRVAAALP 270
N++F ETSAK NV +LF +A LP
Sbjct: 152 NLLFFETSAKTAENVNELFTAIAKKLP 178
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +3
Query: 12 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 152
++VYD+T+ +SF+ +W+ ++ V +LVGNK+D+ DK+ V
Sbjct: 85 IIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVV 131
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +1
Query: 187 LNVMFIETSAKAGYNVKQLFRRVAAALPGMDSAENKPPEDMHEVILRQSPGDNKEQDSSC 366
LN+ F+ETSAK NV+Q F ++ + N + ++ G N Q SS
Sbjct: 143 LNIPFLETSAKDSTNVEQAFLTMSRQIKER-MGNNTFASSNAKSSVKVGQGTNVSQSSSN 201
Query: 367 VC 372
C
Sbjct: 202 CC 203
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 42.7 bits (96), Expect = 5e-05
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 12 VVVYDITNANSFHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDKRQVSTEEGDKKAKE 185
V+VY IT+ +SF D + G++ V I++VGNK+DL +R V+ EEG A E
Sbjct: 82 VLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKALANE 140
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 32.3 bits (70), Expect = 0.064
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +3
Query: 12 VVVYDITNANSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSD-KRQVS 155
V+VYD+ N+ SF W D+ + +L+GNK D+ + KR VS
Sbjct: 85 VLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVS 137
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 31.1 bits (67), Expect = 0.15
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 543 QRSWISDFDNLLVDHRQVKY 484
++SW+S F NLL +H Q+KY
Sbjct: 398 RKSWLSHFSNLLFNHGQLKY 417
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 28.7 bits (61), Expect = 0.78
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +1
Query: 187 LNVMFIETSAKAGYNVKQLFRRVAAALPGMDSAENKPPEDMHEVILRQSPGDNKEQDSS 363
++ +++ETSAK NV++ F + + + +E K ++ V Q P ++ S+
Sbjct: 143 MHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKGFQNKQAVQTAQVPASTAKRASA 201
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -1
Query: 388 SVAASNKH-NCCPAPCCRRAIVSRSPRACLREVCFRQSPCQAGQQLLFG 245
S N H CPAP C AI +A L V C G+Q FG
Sbjct: 206 SFVDDNDHLRWCPAPDCEFAIECHVTQASLSSV-VPTVTCNCGKQFCFG 253
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 500 WSTSKLSKSDIQERCFNLFKYNKICSFY*FILVY----I*VDYYQSRQSDFWIIIG 655
W T K K+++ E+ FN + +F LVY + + Y + S +W+ G
Sbjct: 250 WQTDKYDKNELFEQWFNRASAIAMANFDKLDLVYVASFVMLSYVCAATSKYWMFAG 305
>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 69 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGD 170
+D E+GS+V + +VG +TD ++ ++T + D
Sbjct: 134 EDQVIEKGSNVRLKIVGTRTDATEIFAIATMKED 167
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.4 bits (53), Expect = 7.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 186 FPWPSCRLPRSRPAS 142
FPW SC + +S+P S
Sbjct: 285 FPWKSCTILKSKPVS 299
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 184 KLNVMFIETSAKAGYNVKQLFRRVAAALPGMDSAE 288
K N+ + + SAK+ YN ++ F +A L G + E
Sbjct: 140 KKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLE 174
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +3
Query: 18 VYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGDKKAKETERD 197
+Y IT F ++DD ++G +V + L D+ + GD + ++ +RD
Sbjct: 102 IYIITTLREF----VYVDDNGHDQGQNVRTKAKEITSLLEDEHALKEARGDSRERDRDRD 157
Query: 198 VHRDKR 215
R R
Sbjct: 158 RTRSSR 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,841
Number of Sequences: 5004
Number of extensions: 53501
Number of successful extensions: 176
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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