Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5607
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.075
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 28 1.2
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 3.7
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 26 4.9
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 26 4.9
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 26 6.5
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 26 6.5
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 8.6
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 8.6
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.075
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +2
Query: 344 PQKPTSMEQPGV-SGHSPHTVPGRSSWGGLNVAYEMQQDPNKPG-VSGMASTSKDNMGPV 517
P K + PG S H+P VP ++ +Q P PG V+ + S P
Sbjct: 1427 PLKASQPTNPGAPSNHAPQVVPPAP----MHAVAPVQ--PKAPGMVTNAPAPSSAPAPPA 1480
Query: 518 PICPMPPAIRNKKRAAM-ASVVNMAPGSYA 604
P+ +PPA+ N +M SV P S A
Sbjct: 1481 PVSQLPPAVPNVPVPSMIPSVAQQPPSSVA 1510
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -2
Query: 290 KPEAVKAIV*SIQDSDRSGRALGSAGVCDGT*GSVEKQGCGLVAEAVVVVQSGCSGSACS 111
K E +K I IQ ++G G G C+GT GS GC + + + + S S
Sbjct: 50 KSEDLKDISPLIQQVCKNGTCAGD-GFCNGTGGSASCTGCPALNNRIRSLNASKSQSGRK 108
Query: 110 EARDDPS 90
+PS
Sbjct: 109 SLSPNPS 115
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 395 HTVPGRSSWGGLNVAYEMQQDPNKPGVSGM-ASTSKDN 505
H++PG SWGG+ V + + P ++G+ S KD+
Sbjct: 819 HSLPGWGSWGGVGVK-QRKTKPKVKKIAGLDPSKRKDS 855
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 505 YGPGSHMPDAAGYQEQETSSDGVCCQHGA 591
Y PGS MP A Y +Q T S + G+
Sbjct: 1068 YTPGSDMPSAKLYDQQLTLSPSLMTNQGS 1096
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 289 FGSI*NSWSIAAYFPSATTTKANFYGTAWRLRAFTAYRSW 408
FG+ N+W TT KA+F WRL+ W
Sbjct: 418 FGAADNNWLNNVVDSILTTLKADFPSLLWRLQPSAKNLEW 457
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +2
Query: 527 PMPPAIRNKKRAAMASVVNMAPGSYASWSFRSPVPTRTVCNTYRTRHETEME 682
P+ P+ K+ + SV A R+P+ TR + TYR + M+
Sbjct: 72 PVTPSFAMKR--SQTSVQPSMSSQIAIGGMRNPMATRKIAGTYRDAPDNSMQ 121
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 555 FLFLIAGGIGHMGTGPILSLLVL 487
++ LIAGG+G T PIL L+L
Sbjct: 416 YVLLIAGGVGFSYTLPILRDLIL 438
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 536 PAIRNKK--RAAMASVVNMAPGSYASWSFRSPVPTR 637
PA RN K ++ ++V A S SFRSPVP +
Sbjct: 338 PAERNPKTPQSFSTNIVQCASPSPLPLSFRSPVPNK 373
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +2
Query: 482 MASTSKDNMGPVPICPMPPAIRNKKRAAMASVVNMAPGSYASWS 613
+ S + PVP+CP+ + R + M +++ A WS
Sbjct: 321 LKSVTNFGKSPVPLCPLCKSPRLFEMQLMPHAISILNDEIAEWS 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,746
Number of Sequences: 5004
Number of extensions: 67194
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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