Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5607
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   7.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 211 TPAEPNARPERSESCIDYTIAFTASGFGS 297
           +P  PNA P  +E C   T     S  GS
Sbjct: 737 SPRSPNASPSPAEQCASTTTITARSPQGS 765


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 644 RRSWWARGTGRTRKHRSRAP 585
           R +W  R   RT + RSR P
Sbjct: 60  RETWKERSRDRTERERSREP 79


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 644 RRSWWARGTGRTRKHRSRAP 585
           R +W  R   RT + RSR P
Sbjct: 60  RETWKERSRDRTERERSREP 79


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 644 RRSWWARGTGRTRKHRSRAP 585
           R +W  R   RT + RSR P
Sbjct: 60  RETWKERSRDRTERERSREP 79


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 644 RRSWWARGTGRTRKHRSRAP 585
           R +W  R   RT + RSR P
Sbjct: 60  RETWKERSRDRTERERSREP 79


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 473 VSGMASTSKDNMGPVPICPMPPAIRNKKRAAMASVVNMAPGS 598
           VS + S +   + P    PMPP       + M  + NM PGS
Sbjct: 398 VSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNM-PGS 438


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 413 SSWGGLNVAYEMQQDPNKPGVSGMASTSKDN 505
           ++WG     Y     PN+P     A+T ++N
Sbjct: 211 ANWGYYAYPYCYNLTPNQPSAQCEATTMQEN 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,388
Number of Sequences: 438
Number of extensions: 5338
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)