Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5606
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   3.8  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    25   3.8  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   5.0  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    24   6.7  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    24   6.7  

>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 205 ESIVNDNTGNRTNLTRLIHLIALTIYNMSNKSSSR 309
           E   + +     ++T+L HL+  ++ N+SN  S R
Sbjct: 122 EKFASQHVQEAASMTQLSHLLPSSLINLSNGQSRR 156


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 237 PISCVIVHNRFTELYKY 187
           PISC + HN  TE++ +
Sbjct: 21  PISCAVSHNEQTEIFPH 37


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 250 RLIHLIALTIYNMSNKSSSRNISTKIKSPF*YTSH 354
           R ++L+  T+ N    S  RNI   I  PF  +SH
Sbjct: 132 RGMYLMVDTVVNHMGSSDPRNIDYGIYRPFNQSSH 166


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 214 QSIHRTLQ-VRISNTMVTGHHCKILFQIAPYRYFLNKIK*KVY 89
           +++ R+L  +R +N     H  K+ F+     YF NKI  K Y
Sbjct: 189 ENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFTNKILTKTY 231


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 232 FLCYRSQSIHRTLQVRIS 179
           F+C R   +HR+L V +S
Sbjct: 47  FICIRCSGVHRSLGVHVS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,619
Number of Sequences: 5004
Number of extensions: 27962
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)