Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5606
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   0.88 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   6.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.2  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 205 HRTLQVRISNTMVTGHHCKILFQIAPYRYFLNKIK*KVY 89
           HR L +  S+  +  HH ++L+Q +PY  + N  + K Y
Sbjct: 64  HRDLPIYQSHHHL--HHHQVLYQQSPYLMYENPDEEKRY 100


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 268 ALTIYNMSNKSSSRNISTKIKSPF*YTS 351
           AL IYN S+ S  R  S+   S   YT+
Sbjct: 210 ALIIYNNSDNSFQRLTSSTFASDPRYTT 237


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 163 GHHCKILFQIAPYRYFL 113
           G  C++L+ IAP   F+
Sbjct: 175 GGKCEVLYDIAPLSDFV 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,875
Number of Sequences: 438
Number of extensions: 1754
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)