Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5605
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    24   8.8  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    24   8.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   8.8  

>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 51  PIDTAHCFFFFYCFDG 98
           P++ A C+ F  C DG
Sbjct: 253 PVEVASCYLFLACSDG 268


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 185 TSSKVSSIVTTAAPPFKPKRIRRIFSVGRVSDPV 286
           T + +     T  PP KP++ +R  +V R   P+
Sbjct: 830 TLNSLQKFSLTLTPPQKPQKFKRDLNVQRSLSPI 863


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 106 AHSPPVVKW*LEPIDIHNVNAPPTLR 183
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,128
Number of Sequences: 5004
Number of extensions: 28431
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)