Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5605
         (434 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC096840-1|AAH96840.1|  445|Homo sapiens histamine receptor H3 p...    29   6.9  
AL078633-1|CAC04014.1|  445|Homo sapiens histamine receptor H3 p...    29   6.9  
AJ296652-1|CAC51025.1|  445|Homo sapiens histamine h3 receptor p...    29   6.9  
AJ278250-1|CAC39434.1|  445|Homo sapiens histamine H3 receptor p...    29   6.9  
AF321910-1|AAL71911.1|  445|Homo sapiens histamine H3 receptor i...    29   6.9  
AF140538-1|AAD38151.1|  445|Homo sapiens histamine H3 receptor p...    29   6.9  
AB045369-1|BAB20090.1|  453|Homo sapiens histamine H3 receptor H...    29   6.9  
AB019000-1|BAB17030.1|  453|Homo sapiens G-protein coupled recep...    29   6.9  

>BC096840-1|AAH96840.1|  445|Homo sapiens histamine receptor H3
           protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 291 STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQ 178
           S++GS +R TE+ R ++ G K  A+  ++ + +++VSQ
Sbjct: 305 SSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQ 342


>AL078633-1|CAC04014.1|  445|Homo sapiens histamine receptor H3
           protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 291 STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQ 178
           S++GS +R TE+ R ++ G K  A+  ++ + +++VSQ
Sbjct: 305 SSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQ 342


>AJ296652-1|CAC51025.1|  445|Homo sapiens histamine h3 receptor
           protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 291 STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQ 178
           S++GS +R TE+ R ++ G K  A+  ++ + +++VSQ
Sbjct: 305 SSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQ 342


>AJ278250-1|CAC39434.1|  445|Homo sapiens histamine H3 receptor
           protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 291 STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQ 178
           S++GS +R TE+ R ++ G K  A+  ++ + +++VSQ
Sbjct: 305 SSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQ 342


>AF321910-1|AAL71911.1|  445|Homo sapiens histamine H3 receptor
           isoform 1 protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 291 STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQ 178
           S++GS +R TE+ R ++ G K  A+  ++ + +++VSQ
Sbjct: 305 SSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQ 342


>AF140538-1|AAD38151.1|  445|Homo sapiens histamine H3 receptor
           protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 291 STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQ 178
           S++GS +R TE+ R ++ G K  A+  ++ + +++VSQ
Sbjct: 305 SSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQ 342


>AB045369-1|BAB20090.1|  453|Homo sapiens histamine H3 receptor HH3R
           protein.
          Length = 453

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 291 STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQ 178
           S++GS +R TE+ R ++ G K  A+  ++ + +++VSQ
Sbjct: 305 SSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQ 342


>AB019000-1|BAB17030.1|  453|Homo sapiens G-protein coupled receptor
           protein.
          Length = 453

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 291 STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQ 178
           S++GS +R TE+ R ++ G K  A+  ++ + +++VSQ
Sbjct: 305 SSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQ 342


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,425,961
Number of Sequences: 237096
Number of extensions: 1059614
Number of successful extensions: 1751
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1751
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)