Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5605
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   4.4  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   4.4  
AF040648-6|AAO91708.1|  908|Caenorhabditis elegans Lethal protei...    27   4.4  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   4.4  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   4.4  
AC024749-2|AAF60435.2|  444|Caenorhabditis elegans Hypothetical ...    27   4.4  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    27   7.8  

>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
           protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 183 SQGGWRIYVVDVYGLQSPLNNRWAVSSSTHQSNKKKKNS 67
           SQG WR+ V  V    S   +R A+ +S+ Q +++ K S
Sbjct: 839 SQGDWRVQVRGVNTAGSGTPSRDAIFASSAQQSRRSKRS 877


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
           protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 183 SQGGWRIYVVDVYGLQSPLNNRWAVSSSTHQSNKKKKNS 67
           SQG WR+ V  V    S   +R A+ +S+ Q +++ K S
Sbjct: 839 SQGDWRVQVRGVNTAGSGTPSRDAIFASSAQQSRRSKRS 877


>AF040648-6|AAO91708.1|  908|Caenorhabditis elegans Lethal protein
           805, isoform d protein.
          Length = 908

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 183 SQGGWRIYVVDVYGLQSPLNNRWAVSSSTHQSNKKKKNS 67
           SQG WR+ V  V    S   +R A+ +S+ Q +++ K S
Sbjct: 839 SQGDWRVQVRGVNTAGSGTPSRDAIFASSAQQSRRSKRS 877


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
           805, isoform b protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 183 SQGGWRIYVVDVYGLQSPLNNRWAVSSSTHQSNKKKKNS 67
           SQG WR+ V  V    S   +R A+ +S+ Q +++ K S
Sbjct: 839 SQGDWRVQVRGVNTAGSGTPSRDAIFASSAQQSRRSKRS 877


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
           805, isoform a protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 183 SQGGWRIYVVDVYGLQSPLNNRWAVSSSTHQSNKKKKNS 67
           SQG WR+ V  V    S   +R A+ +S+ Q +++ K S
Sbjct: 839 SQGDWRVQVRGVNTAGSGTPSRDAIFASSAQQSRRSKRS 877


>AC024749-2|AAF60435.2|  444|Caenorhabditis elegans Hypothetical
           protein Y16E11A.1 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 198 TLELVSQGGWRIYVVDVYGLQSPLNNRW 115
           TL+LVSQ G R+     Y  + P+ N W
Sbjct: 72  TLKLVSQNGKRLTKNGQYTFEKPIGNGW 99


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +2

Query: 185 TSSKVSSIVTTAA-PPFKPKRIR 250
           ++S+ SSI TTA  PPF P++IR
Sbjct: 360 SNSQASSIPTTATPPPFLPEKIR 382


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 291  STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQG 175
            ST+       EKIR  R G++ GA  +T +  L   +QG
Sbjct: 2194 STSSGVQEDMEKIRASRTGMEYGAQKLTKVNKLSTANQG 2232


>Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 162 YVVDVYGLQSPLNNRWAVSSSTHQSNKKKKNSG 64
           Y  + YG  +  N+ W  SSS + +N    N+G
Sbjct: 418 YSKNGYGSNNNRNDGWGSSSSNNNNNNNNNNNG 450


>Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 162 YVVDVYGLQSPLNNRWAVSSSTHQSNKKKKNSG 64
           Y  + YG  +  N+ W  SSS + +N    N+G
Sbjct: 418 YSKNGYGSNNNRNDGWGSSSSNNNNNNNNNNNG 450


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 291  STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQG 175
            ST+       EKIR  R G++ GA  +T +  L   +QG
Sbjct: 2194 STSSGVQEDMEKIRASRTGMEYGAQKLTKVNKLSTANQG 2232


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 291  STTGSETRPTEKIRRMRFGLKGGAAVVTILETLELVSQG 175
            ST+       EKIR  R G++ GA  +T +  L   +QG
Sbjct: 2194 STSSGVQEDMEKIRASRTGMEYGAQKLTKVNKLSTANQG 2232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,854,926
Number of Sequences: 27780
Number of extensions: 166342
Number of successful extensions: 298
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)