Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5603
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    26   4.7  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    26   6.3  

>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 633 TSCRAFDRVW*HRSNGSVFPGSPGWRLG 716
           T+CR + ++  +R NG +   +PGW  G
Sbjct: 150 TACRIYGQLVVNRVNGQLHITAPGWGYG 177


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 598 LCQLLNALVIGQRRAGRSIGSGNIGPTGRY 687
           LC  L+A  +G+ + G ++    +GP G Y
Sbjct: 207 LCTSLHACTLGEVKKGDTVAIWGMGPIGLY 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,894
Number of Sequences: 5004
Number of extensions: 27079
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)