Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5603
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-14|AAB09153.1|   81|Caenorhabditis elegans Nematode speci...    30   1.9  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    28   7.8  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      28   7.8  

>U70854-14|AAB09153.1|   81|Caenorhabditis elegans Nematode specific
           peptide family,group b protein 5 protein.
          Length = 81

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 381 PLVTAPYGIAA-PYGIAAPYTAYGAYGVAPYSLGVHAW 491
           P+V++PY  A+ P   A PY AY AYG A Y    + W
Sbjct: 25  PVVSSPYYYASSPVASAYPY-AY-AYGAAAYPTAYYGW 60


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 716 P*APTGGSGKYRPVGPMLPDPIERPARRCP 627
           P AP GG G Y P+ P  P P   P    P
Sbjct: 799 PGAPGGGGGMYPPLIPTRPGPGGPPPNMAP 828


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 716 P*APTGGSGKYRPVGPMLPDPIERPARRCP 627
           P AP GG G Y P+ P  P P   P    P
Sbjct: 799 PGAPGGGGGMYPPLIPTRPGPGGPPPNMAP 828


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,311,998
Number of Sequences: 27780
Number of extensions: 161290
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)