Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5602
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 78 1e-15
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc... 45 5e-10
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 31 0.18
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 1.7
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 27 3.9
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 5.2
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 5.2
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 26 5.2
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 26 5.2
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.8
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 9.0
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 9.0
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 78.2 bits (184), Expect = 1e-15
Identities = 44/143 (30%), Positives = 73/143 (51%)
Frame = +1
Query: 130 FGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNSQVTFTDEHLKSLEEDADKHWD 309
FG R L E+VF+ N+WD+VEWD++ A++ + T++ + +++WD
Sbjct: 27 FGGRLLTEEEDVFEQNAWDHVEWDDEHLALAKKCIEEQKLYPVTEK--DAYMTHPERYWD 84
Query: 310 AFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRVFSETTNHANKQNTTLSSTSDTIRNI 489
FY ++ +FF +R W+ EFPEL + + E ++I
Sbjct: 85 QFYGKNEGKFFMNRRWIAQEFPEL--------LDLLKEDAGE---------------KSI 121
Query: 490 FEIGCGVGNTIFPILQYSQDPKL 558
EIGCG GNTI+PIL+ +++ L
Sbjct: 122 LEIGCGAGNTIWPILKENKNSNL 144
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 545 KIQNYLVYGCDFSSKAIEIMKQNELY 622
K N ++ D+S KAI+++KQN LY
Sbjct: 140 KNSNLKIFAVDYSEKAIDVVKQNPLY 165
>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 45.2 bits (102), Expect(2) = 5e-10
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 259 TDEHLKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEF 372
+D ++ ++++ K WD FY ++ RFFKDRHWL EF
Sbjct: 8 SDFWVEKYKKESKKSWDKFYKRNETRFFKDRHWLDREF 45
Score = 34.3 bits (75), Expect(2) = 5e-10
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 487 IFEIGCGVGNTIFPILQYSQDPKLF 561
I E+GCGVGN ++P+L+ + K++
Sbjct: 59 ILEVGCGVGNLVYPLLEVQPNLKIY 83
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 554 NYLVYGCDFSSKAIEIMKQNELY 622
N +Y CDFS +AI+ +K++ Y
Sbjct: 79 NLKIYCCDFSPRAIDFVKKHSCY 101
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 536 NTVKIQNYLVYGCDFSSKAI-EIMKQNELYIQIDVKYLYWMQQEADWN-VPFQGK 694
N VK + L+ GCD+SS +I +I+ Q E ++ ++ + ++QE + V F GK
Sbjct: 805 NAVKKRLCLLMGCDYSSVSILQIVSQIEHFVNQQIQTIRSLKQELRHDFVQFSGK 859
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 3 VIKNSSSTYDTNILIP*IRYSIKPKAFKIKKIN 101
V++ STYD +L+P Y P + +K ++
Sbjct: 253 VLQQDQSTYDQKVLMPPASYLSSPNQYTLKNVS 285
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +1
Query: 226 EKVRNNSQV--TFTDEHLKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPELAPDNTS 399
EK+ N ++V + +E SL++ A + A + + D FT P
Sbjct: 196 EKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPKKVLLDIEQTFTARPARGGRPNR 255
Query: 400 APVRVFSETTNHANKQNTTLSST 468
AP R SET + + TLS T
Sbjct: 256 APRRGPSETASKTQQAPPTLSET 278
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 160 LQHFPDIYSQIEVFYQNYQPLI 95
+Q + DIY ++ + NY PLI
Sbjct: 434 VQEYEDIYESVKTQFSNYGPLI 455
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 271 LKSLEEDADKHWDAFYDIHQNRFFKDRH 354
L++LEEDA + D+ YD + F D H
Sbjct: 79 LRTLEEDAFSYTDSVYDFEERSF--DEH 104
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 193 EWDEDQEKKAQEKVRNNSQVTFTDEHLKSLEEDADKHWDAFYDIHQNRFFKDR 351
+W EDQ K+ QE R+ S + +++ + D ++ F D K R
Sbjct: 111 KWKEDQMKRIQE--RDESSKKLRESNIEKARKAIDDFYENFNDKRDKVIAKSR 161
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Frame = +1
Query: 91 KKSMVDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKV-------RNNSQ 249
KKS ++ K ++ E++ N++++V ED+ AQ+K+ +
Sbjct: 4 KKSRSSSTRKGSSLKVPEIKEKEKINAINTYEDVANSEDEFYNAQDKILFDADNGEQADE 63
Query: 250 VTFTDEHLKSLEEDADK 300
+ +DE L +LE +D+
Sbjct: 64 LELSDEELVALESSSDE 80
>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 157 EEVFKHNSWDNVEWDEDQEKKAQEKVRNNSQVTFTDEHLKSLEEDADKHWDAF 315
+EV DNV + DQ K + R+N++ + +HLK + + ++ F
Sbjct: 61 KEVSSSEVSDNVGMEVDQPKVSTSGPRDNNRNKWAKKHLKKGKRAKNSNFSKF 113
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 383 HLTIHLHLYECFQKLQTMQTNKTQLSVLLVIQFV-TYLK 496
H IH+++ C + Q +NKT ++ + V TYL+
Sbjct: 290 HERIHVYIARCAEDFQEFTSNKTYSIIITGYETVCTYLR 328
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 97 SMVDNSDKRPQFGNRYLENAEEVFKHNSWDN 189
++ D K P+F YL AEEV KH +DN
Sbjct: 1058 TVYDPCMKLPRFKTEYLNVAEEVKKH--YDN 1086
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,883
Number of Sequences: 5004
Number of extensions: 73203
Number of successful extensions: 264
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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