Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5602
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.5  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 596 EIMKQNELYIQIDVKYLYWMQQEADWNVPFQGKFNR 703
           ++ K ++ Y  ++ +Y    ++EA WN P    F+R
Sbjct: 75  KLNKIHDAYKDLNQRYGALCKEEALWNFPMISVFSR 110


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 128 NLGIDIWKMLKKCL 169
           N+GI+ W+ L +CL
Sbjct: 64  NIGINKWRFLLQCL 77


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 106 DNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNN 243
           DN +   Q GNR  +N +   K N   N + D  Q    Q   + N
Sbjct: 448 DNQNANKQNGNRQNDNRQNDNKQNG--NRQNDNKQNGNRQNDNKQN 491


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 205 LHPIPHYPTSCV*TLLQHFPDIYSQIEVFYQNYQPLIFFILN 80
           LH  P    +C  + L  FP    +I+V  + + P++F   N
Sbjct: 391 LHMQPR-KKNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFN 431


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 205 LHPIPHYPTSCV*TLLQHFPDIYSQIEVFYQNYQPLIFFILN 80
           LH  P    +C  + L  FP    +I+V  + + P++F   N
Sbjct: 391 LHMQPR-KKNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFN 431


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -3

Query: 600 ISIALDEKSQPYTK*FWILTVLQYWENCVSNTTTYFKYVTNCI 472
           +S   + +  PYT+   IL  +   +N ++   T   ++TN +
Sbjct: 460 MSRPFEVRYDPYTQRVEILDSVDRLDNLMAQVNTEMTHLTNAV 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,666
Number of Sequences: 438
Number of extensions: 5011
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)