Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5601
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.044
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.3
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 3.8
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 8.9
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 8.9
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.1 bits (72), Expect = 0.044
Identities = 32/117 (27%), Positives = 56/117 (47%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLS 381
+L S + +L TPI T S+PI+S ++ L +S +T VL++S ++
Sbjct: 1853 ALNTSTPITSSSVLNSSTPITSSTALNTSTPITS---SSVLNSSTPITSSTVLNSSTPIT 1909
Query: 380 K*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFTSSLILN 210
T T + +S +L+ + T S + ++ S ++ S ST TSS +LN
Sbjct: 1910 SSTALNTSTPITSSS-VLNSSTPITSSSVLNSSTPITSSTVVNS--STPITSSSVLN 1963
Score = 33.1 bits (72), Expect = 0.044
Identities = 32/117 (27%), Positives = 56/117 (47%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLS 381
+L S + +L TPI T S+PI+S ++ L +S +T VL++S ++
Sbjct: 2045 ALNTSTPITSSSVLNSSTPITSSTALNTSTPITS---SSVLNSSTPITSSTVLNSSTPIT 2101
Query: 380 K*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFTSSLILN 210
T T + +S +L+ + T S + ++ S ++ S ST TSS +LN
Sbjct: 2102 SSTALNTSTPITSSS-VLNSSTPITSSSVLNSSTPITSSTVVNS--STPITSSSVLN 2155
Score = 29.5 bits (63), Expect = 0.54
Identities = 31/117 (26%), Positives = 56/117 (47%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLS 381
+L S + +L TPI T S+PI+S ++ L +S +T V+++S ++
Sbjct: 1301 ALNTSTSITSSSVLNSSTPITSSTVVNTSTPITS---SSVLNSSTPITSSTVVNSSTPIT 1357
Query: 380 K*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFTSSLILN 210
T T + +S +++ + T S + ++ S +L S ST TSS +LN
Sbjct: 1358 SSTVVNTSTPITSST-VVNTSTPITSSTVVNSSTPITSSTVLNS--STPITSSSVLN 1411
Score = 29.1 bits (62), Expect = 0.72
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 8/125 (6%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPI-SSR*FNTS--LCNSVLLTPVLVLSASI 390
+L S + +L TPI T S+PI SS N+S + +S ++ +++S
Sbjct: 2369 ALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSS 2428
Query: 389 KLSK*TDFATKSLRSSGE*ILSKAIV-----FTRSHLRVM*RNVSDSVLLGSRISTKFTS 225
L+ T + S+ +S I S +V T S + ++ S L + ST TS
Sbjct: 2429 VLNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSSVLNSSTPITSSTALNT--STPITS 2486
Query: 224 SLILN 210
S +LN
Sbjct: 2487 SSVLN 2491
Score = 29.1 bits (62), Expect = 0.72
Identities = 29/116 (25%), Positives = 53/116 (45%)
Frame = -1
Query: 557 LTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLSK 378
L +S + +L TPI T S+PI+S ++ L +S +T ++++S ++
Sbjct: 3054 LNSSTPITSSSVLNSSTPITSSTALNTSTPITS---SSVLNSSTAITSSSIVNSSTPITS 3110
Query: 377 *TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFTSSLILN 210
+ S + IL+ + T S + ++ S ++ S ST TSS LN
Sbjct: 3111 -SSVLNSSTAITSSSILNSSTPITSSSILNSSTPITSSTVVNS--STPITSSTTLN 3163
Score = 28.7 bits (61), Expect = 0.95
Identities = 31/117 (26%), Positives = 54/117 (46%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLS 381
+L S + +L TPI T S+PI+S ++ L +S +T VL++S ++
Sbjct: 1589 ALNTSTPITSSSVLNSSTPITSSTALNTSTPITS---SSVLNSSTPITSSTVLNSSTPIT 1645
Query: 380 K*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFTSSLILN 210
T T +S +++ + T S + ++ S ++ S ST TSS LN
Sbjct: 1646 SSTALNTSPPITSST-VVNSSTPITSSTVVNTSTPITSSTVVNS--STPITSSTALN 1699
Score = 28.7 bits (61), Expect = 0.95
Identities = 35/116 (30%), Positives = 54/116 (46%)
Frame = -1
Query: 557 LTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLSK 378
L +S + +L TPI T S+PI+S +S+ NS TP+ ++S L+
Sbjct: 2826 LNSSTPITSSSVLNSSTPITSSTALNTSTPITS----SSVLNS--STPI---TSSTALNT 2876
Query: 377 *TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFTSSLILN 210
T + S+ +S I S +V T + + S SVL ST TSS ++N
Sbjct: 2877 STSITSSSVLNSSTPITSSTVVNTSTPI------TSSSVL---NSSTPITSSTVVN 2923
Score = 28.3 bits (60), Expect = 1.3
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*F---NTSLCNSVLL---TPVL--- 408
+L S + +L TPI T S+PI+S +T++ +S L TP+
Sbjct: 665 ALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSTALNTSTPITSSS 724
Query: 407 VLSASIKLSK*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFT 228
VL++S ++ T T + +S +L+ + T S + ++ S +L S ST T
Sbjct: 725 VLNSSTPITSSTALNTSTPITSSS-VLNSSTPITSSSILNSSTPITSSSVLNS--STPIT 781
Query: 227 SSLILN 210
SS ++N
Sbjct: 782 SSTVVN 787
Score = 27.9 bits (59), Expect = 1.7
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLS 381
+L S + +L TPI T S+PI+S +S+ NS TP+ ++S L+
Sbjct: 1757 ALNTSTPITSSSVLNSSTPITSSTALNTSTPITS----SSVLNS--STPI---TSSTALN 1807
Query: 380 K*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGS---RISTKFTSSLILN 210
T + S+ +S I S +V T + + S + + S ST TSS +LN
Sbjct: 1808 TSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLN 1867
Score = 27.5 bits (58), Expect = 2.2
Identities = 29/117 (24%), Positives = 52/117 (44%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLS 381
+L S + +L TPI T S+PI+S ++ L +S +T V++ S ++
Sbjct: 533 ALNTSTSITSSSVLNSSTPITSSTVVNTSTPITS---SSVLNSSTPITSSTVVNTSTPIT 589
Query: 380 K*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFTSSLILN 210
+ S + +L+ + T S + ++ S L + ST TSS +LN
Sbjct: 590 R-YSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNT--STPITSSSVLN 643
Score = 27.5 bits (58), Expect = 2.2
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Frame = -1
Query: 557 LTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*F---------NTSLCNSVLLTPVLV 405
L +S + +L TPI T S+PI+S +T+L S +T V
Sbjct: 642 LNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV 701
Query: 404 LSASIKLSK*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFTS 225
L++S ++ T T + +S + S + + + L S SVL ST TS
Sbjct: 702 LNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVL---NSSTPITS 758
Query: 224 SLILN 210
S ILN
Sbjct: 759 SSILN 763
Score = 27.1 bits (57), Expect = 2.9
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*F---------NTSLCNSVLLTPVL 408
+L +S + +L TPI T S+PI+S +T+L S +T
Sbjct: 2573 ALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSS 2632
Query: 407 VLSASIKLSK*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFT 228
VL++S ++ T T + +S +L+ + T S + ++ S +L S ST T
Sbjct: 2633 VLNSSTPITSSTALNTSTSITSSS-VLNSSTPITSSTVVNTSTPITSSSVLNS--STPIT 2689
Query: 227 SSLILN 210
SS ++N
Sbjct: 2690 SSTVVN 2695
Score = 26.6 bits (56), Expect = 3.8
Identities = 30/117 (25%), Positives = 51/117 (43%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLS 381
+L S + +L TPI T S+PI+S ++ L +S +T V++ S ++
Sbjct: 2873 ALNTSTSITSSSVLNSSTPITSSTVVNTSTPITS---SSVLNSSTPITSSTVVNTSTPIT 2929
Query: 380 K*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFTSSLILN 210
T S + L+ + T S + ++ S L + ST TSS +LN
Sbjct: 2930 SST-VVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNT--STSITSSSVLN 2983
Score = 26.2 bits (55), Expect = 5.1
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = -1
Query: 557 LTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLSK 378
L +S + IL TPI + S+PISS +T + +SV++ VLS + +
Sbjct: 3450 LNSSTAIASSSILNSSTPITSSSVLNSSTPISS---STVITSSVVIGSSSVLSYASSIVS 3506
Query: 377 *TDFATKSLRSSG 339
+ L SSG
Sbjct: 3507 SVSLNSSLLSSSG 3519
Score = 25.8 bits (54), Expect = 6.7
Identities = 31/117 (26%), Positives = 51/117 (43%)
Frame = -1
Query: 560 SLTNSLIFIMNEILRKKTPIHLMTCNFLSSPISSR*FNTSLCNSVLLTPVLVLSASIKLS 381
+L S + +L TPI T S+PI+S ++ L +S +T V++ S ++
Sbjct: 2969 ALNTSTSITSSSVLNSSTPITSSTVVNTSTPITS---SSVLNSSTPITSSTVVNTSTPIT 3025
Query: 380 K*TDFATKSLRSSGE*ILSKAIVFTRSHLRVM*RNVSDSVLLGSRISTKFTSSLILN 210
T S + L+ + T S + ++ S +L S ST TSS LN
Sbjct: 3026 SST-VVNSSTPITSSTALNTSTPITSSTVLNSSTPITSSSVLNS--STPITSSTALN 3079
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Frame = -1
Query: 602 GFLPIVNFSWSTFGSLTNSLIFIMNEIL------RKKTPIHLMTCNFLSSPISSR*FNTS 441
GF P++N S + SL+F + IL +K P + N L+ + S F
Sbjct: 1021 GFFPVINRLESEILGIFESLLFHFDSILGYQNYWKKVEP--FLNLNSLNLLLKSELFQLD 1078
Query: 440 LCNSVLLTPVLVLSASIKLSK*TDFATKSLRSS 342
C S+ L + + S ++ K TDF S+ ++
Sbjct: 1079 QCYSLSLYLIHLKSEVDEIGKVTDFKIFSVNNT 1111
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +1
Query: 463 EMGLDKKLHVIRWMGVFFLK---ISFMMKIK--LFVNEPKVL 573
E+ +D KL I W F+K + + +I LFVN P+VL
Sbjct: 367 ELDMDLKLITINWFFSLFIKDFRLDYAFRILDCLFVNGPRVL 408
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 710 KIHSGSNSRKVNMVMPPQIGHKTKVCITAMCGRNNTGF 597
+++S S SR NM+ G + + + + G +NT F
Sbjct: 562 RLNSASRSRSANMIRQGANGSDSNMSSSPVSGNSNTPF 599
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 542 IFIMNEILRKKTPIHLMTCNFLSS 471
I +MN+ L++KT I M N LSS
Sbjct: 446 ISLMNDTLKEKTDIFTMLTNSLSS 469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,920
Number of Sequences: 5004
Number of extensions: 60762
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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