Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5601
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842...    30   2.3  
03_05_0051 - 20288456-20291728                                         29   3.0  
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    28   7.0  
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558...    28   7.0  
08_02_1174 - 24922247-24922286,24922590-24922672,24922971-249230...    28   9.3  
01_01_0490 + 3620523-3623403,3623524-3623996                           28   9.3  

>05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,
            8427110-8427205,8427530-8427616,8428639-8428767,
            8428922-8429098,8429185-8429295,8429642-8429761,
            8430767-8432427,8432485-8432867,8433707-8434470,
            8434532-8434813,8436158-8436493
          Length = 1523

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 298  WDL-VKTMALDKIYSPEDLKDFVAKSVYLDNFIDAESTRTGVSKTELHKEVLNYLEEMGL 474
            W++ VK   + K+ S ++L    A +VY D+    +      +  +  K  + ++ E+GL
Sbjct: 825  WEIMVKIGLIGKLTSLQELWIEPAAAVYDDDAASVDDDDDAAAVDDTTKSTMKFVNELGL 884

Query: 475  DKKLHVIR 498
             ++L V+R
Sbjct: 885  LRELRVLR 892


>03_05_0051 - 20288456-20291728
          Length = 1090

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 322 LDKIYSPEDLKD-FVAKSVYLDNFIDAESTRTGVSKTELHKEVLNYLEEMGLDKKLHVIR 498
           L+ I +P++ K+  + K V L       +    +  ++   EVL YL+     K+L +I 
Sbjct: 716 LENIDAPDEAKEAMLCKKVNLTMLQLMWAPARDLVNSDKEAEVLEYLQPHPNLKRLDIIG 775

Query: 499 WMGV 510
           WMGV
Sbjct: 776 WMGV 779


>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -1

Query: 713 VKIHSGSNSRKVNMVMPPQIGHKTKVCITAMCGRNNTGFLPIVNFSWSTFGSLTNSLIF 537
           ++++   NS K    +PP +G  +K+    +     TG LPI N +     +LT++  F
Sbjct: 125 LRLYRSLNSNKFTGSIPPSLGGLSKLYWFDLADNQLTGGLPISNATSPGLDNLTSTKHF 183


>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
            15155932-15156024,15156282-15156351,15156716-15156912,
            15156946-15157215,15158620-15158757,15158841-15158930,
            15159041-15159247,15159987-15160154,15160300-15160503,
            15160584-15160670,15160748-15160861,15161689-15161835,
            15161914-15162063,15162211-15162276,15162376-15162480,
            15162625-15162798,15162930-15163154,15163534-15163590,
            15163858-15164019,15164234-15164302,15164391-15164471,
            15164823-15164925,15165011-15165156,15165285-15165359,
            15165441-15165508,15165586-15165667,15165745-15165858,
            15166358-15166476,15166692-15166781,15166862-15166988
          Length = 1382

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +1

Query: 412  TGVSKTELHKEVLNYLEEMGLDKKLHVIRWM 504
            TGV++ ELH+++L+  EE   DK L  I++M
Sbjct: 1230 TGVNENELHQQLLSITEER--DKLLSEIKYM 1258


>08_02_1174 -
           24922247-24922286,24922590-24922672,24922971-24923082,
           24923495-24923615,24924015-24924060,24924348-24924425,
           24925261-24925365
          Length = 194

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +1

Query: 409 RTGVSKTELHKEVLNYLEEMGLDKKLHVIR------WMGVFFLKISFMMKIKLFVNE 561
           +  V+ ++LH+ V N  +  GL  ++HV R      W  +F L ++ +  I L +NE
Sbjct: 138 KIAVALSDLHQRVTNSKDFGGLPYRVHVQRQARSETWGILFILTMASVCSIALIINE 194


>01_01_0490 + 3620523-3623403,3623524-3623996
          Length = 1117

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -1

Query: 713 VKIHSGSNSRKVNMVMPPQIGHKTKVCITAMCGRNNTGFLPIVNFSWSTFGSLTN-SLIF 537
           +++  G  ++ +   +PP+IG+ +K+ +  +   + +G LP      +T G L N + + 
Sbjct: 203 LEVLRGGGNKNLQGALPPEIGNCSKLTMLGLAETSISGPLP------ATLGQLKNLNTLA 256

Query: 536 IMNEILRKKTPIHLMTCNFLSS 471
           I   +L    P  L  C  L +
Sbjct: 257 IYTALLSGPIPPELGRCTSLEN 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,416,369
Number of Sequences: 37544
Number of extensions: 352316
Number of successful extensions: 748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)