Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5600
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 32 0.58
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 31 0.76
10_06_0172 + 11473892-11474896 31 1.3
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 30 1.8
09_04_0389 + 17239182-17239316,17240246-17240878 29 4.1
05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784... 29 4.1
09_02_0082 - 4060018-4061604 28 7.1
05_07_0220 + 28482589-28483752 28 7.1
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 28 7.1
09_06_0115 + 20944586-20945185 28 9.4
08_01_1010 - 10215625-10216335,10216372-10216473 28 9.4
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 28 9.4
02_04_0043 + 19185969-19186036,19186205-19187342 28 9.4
02_03_0229 + 16617371-16617970 28 9.4
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 271 PSTRATPRLPSPSQHPSLRPL--RPQYLPFHPTLPRHRMA 384
PS R+ PR P+P PSL+P PQ + PT P + A
Sbjct: 478 PSLRSPPRQPTPPPSPSLQPAFPAPQPVQASPTSPAKQHA 517
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 271 PSTRATPRLPSPSQHPSLRPLRPQYL-PFHPTLP 369
P+T A P PSP P L P+ P++L P P LP
Sbjct: 361 PTTAAAPPPPSPHAQPPLLPVWPRHLAPPPPPLP 394
>10_06_0172 + 11473892-11474896
Length = 334
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -2
Query: 650 RLSRKWLIKDGGASVGKRSC-MSVTGYRGSVCLGHQRSGMGIGCVRGGVSNRGCMCGISC 474
RL+ + + GG +V + ++V G+ S C H S G G V V + C C
Sbjct: 148 RLAARLGVAPGGVAVVLTAADVAVEGFCSSACGAHGSSAPGGGAVHVWVGDASAQCPGRC 207
Query: 473 EW 468
W
Sbjct: 208 AW 209
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 554 GHQRSG-MGIGCVRGGVSNRGCMCGISCEWCSMRSVSCNRCGSG 426
GH +SG G GC GG GC G++ E V CGSG
Sbjct: 817 GHVKSGGCGSGC--GGGCGGGCGGGVAMESSKAGHVKSGGCGSG 858
Score = 28.3 bits (60), Expect = 7.1
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = -2
Query: 686 KAPVGHVGKQRGRLSRKWLIKDGGASVGKRSCMSVTGYRGSVCLGHQR-SGMGIGCVRGG 510
KA VG GK G S GG G M+V + V H + +G G GC GG
Sbjct: 749 KAGVGGHGKSGGCGSGC----GGGCGGGGCGAMAVESSKDDV---HAKCAGCGSGC--GG 799
Query: 509 VSNRGCMCGISCEWCSMRSVSCNRCGSG 426
GC G+ E V CGSG
Sbjct: 800 GCGGGCGGGMVMEASKAGHVKSGGCGSG 827
>09_04_0389 + 17239182-17239316,17240246-17240878
Length = 255
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 229 RHMLQLLIQPTLRLPSTRATPRLPSPSQHPSLRP-LRPQYLP 351
RH++++L R+P A PR P++ RP RP+ +P
Sbjct: 167 RHLVEVLESAKTRVPVLTAAPRRSGPARDELRRPKSRPETIP 208
>05_05_0055 +
21977546-21978061,21978144-21978162,21978168-21978486,
21978779-21978799,21980780-21980857,21981116-21981359
Length = 398
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 268 LPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLPRHR 378
LPST T R PSP + P P+R + + PR R
Sbjct: 74 LPSTTTTRRRPSPGRLPRRSPIRARAGSSETSSPRGR 110
>09_02_0082 - 4060018-4061604
Length = 528
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 553 PRHTLPL*PVTLMQLLLPTLAPPSLISHFLLSRP 654
P T+P PVT P++A P+ +SH L P
Sbjct: 435 PSPTVPAPPVTAAPATAPSVAAPAAVSHGLTLSP 468
>05_07_0220 + 28482589-28483752
Length = 387
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 262 LRLPSTRATPRLPSPSQHPSLRPLRPQYLP 351
LRLP + P LP P Q P + P +P
Sbjct: 165 LRLPKEQTVPALPPPPQSPPAALMNPVAVP 194
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 479 LCRTCSPCCLLRPLHNLCPCRSFGDQDIRCPCSQ 580
+C++ C LL P +LC C+ + CP Q
Sbjct: 298 VCKSSEACMLLLPCRHLCLCKECESKLSFCPLCQ 331
>09_06_0115 + 20944586-20945185
Length = 199
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 560 CLGHQRSGMGIGCVRGGVSNRGCMCGISCEWCSM 459
C G +R+G+G G + GG + RG M G+ C +
Sbjct: 136 CGGSRRAGLGWGRMGGG-TGRGAMGGVPAGACGL 168
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 271 PSTRATPR-LPSPSQHPSLRPLR---PQYLPFHPTLPR 372
PST PR SP PS P R P Y P PT PR
Sbjct: 105 PSTPTPPRRAASPDYTPSTPPPRAASPDYTPSTPTPPR 142
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 662 KQRGRLSRKWLIKDGGASVGKRSCM-SVTGYRGSVCLGHQRSGMGIGCVRGGVSNRG 495
+++ R R+W D G G+R S +C+ H + G+ GG S RG
Sbjct: 274 ERKPRRGRQWGAGDVGEGEGERKVQESAPAAAVPLCILHAATDAGVASGEGGGSRRG 330
>02_04_0043 + 19185969-19186036,19186205-19187342
Length = 401
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 482 CRTCSP---CCLLRPLHNLCPCRSFGDQDIRCP-CSQLRSCS 595
CR C C LL P +LC CR CP C+ ++ S
Sbjct: 354 CRACGEADACVLLLPCRHLCLCRGCEAAADACPVCAATKNAS 395
>02_03_0229 + 16617371-16617970
Length = 199
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 560 CLGHQRSGMGIGCVRGGVSNRGCMCGISCEWCSM 459
C G +R+G+G G + GG + RG M G+ C +
Sbjct: 136 CGGSRRAGLGWGRMGGG-TGRGAMGGVPAGACGL 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,113,264
Number of Sequences: 37544
Number of extensions: 312639
Number of successful extensions: 1335
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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