Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5599
         (475 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC103938-1|AAI03939.1|  362|Homo sapiens LIM homeobox 6 protein.       30   4.7  
BC103937-1|AAI03938.1|  363|Homo sapiens LIM homeobox 6 protein.       30   4.7  
BC103936-1|AAI03937.1|  348|Homo sapiens LIM homeobox 6 protein.       30   4.7  
AL162424-5|CAO03566.1|  377|Homo sapiens LIM homeobox 6 protein.       30   4.7  
AL162424-4|CAO03565.1|  392|Homo sapiens LIM homeobox 6 protein.       30   4.7  
AL162424-3|CAI14704.1|  348|Homo sapiens LIM homeobox 6 protein.       30   4.7  
AL162424-2|CAI14703.1|  363|Homo sapiens LIM homeobox 6 protein.       30   4.7  
AB031042-1|BAA83423.1|  348|Homo sapiens LIM-homeodomain (LHX) p...    30   4.7  
AB031041-1|BAA83422.1|  363|Homo sapiens LIM-homeodomain (LHX) p...    30   4.7  

>BC103938-1|AAI03939.1|  362|Homo sapiens LIM homeobox 6 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 249 ICGPKFCIFRVPKTCXNTCKSCLLKNTDST*LSLNVKSIYIANKKTLFCSRCVTSKNTQK 428
           +C P      VP    N C SC L+  D   L +N     I + + L CS C TS   Q 
Sbjct: 52  VCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVN---NLIWHVRCLECSVCRTSLRQQN 108

Query: 429 N 431
           +
Sbjct: 109 S 109


>BC103937-1|AAI03938.1|  363|Homo sapiens LIM homeobox 6 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 249 ICGPKFCIFRVPKTCXNTCKSCLLKNTDST*LSLNVKSIYIANKKTLFCSRCVTSKNTQK 428
           +C P      VP    N C SC L+  D   L +N     I + + L CS C TS   Q 
Sbjct: 52  VCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVN---NLIWHVRCLECSVCRTSLRQQN 108

Query: 429 N 431
           +
Sbjct: 109 S 109


>BC103936-1|AAI03937.1|  348|Homo sapiens LIM homeobox 6 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 249 ICGPKFCIFRVPKTCXNTCKSCLLKNTDST*LSLNVKSIYIANKKTLFCSRCVTSKNTQK 428
           +C P      VP    N C SC L+  D   L +N     I + + L CS C TS   Q 
Sbjct: 52  VCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVN---NLIWHVRCLECSVCRTSLRQQN 108

Query: 429 N 431
           +
Sbjct: 109 S 109


>AL162424-5|CAO03566.1|  377|Homo sapiens LIM homeobox 6 protein.
          Length = 377

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 249 ICGPKFCIFRVPKTCXNTCKSCLLKNTDST*LSLNVKSIYIANKKTLFCSRCVTSKNTQK 428
           +C P      VP    N C SC L+  D   L +N     I + + L CS C TS   Q 
Sbjct: 81  VCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVN---NLIWHVRCLECSVCRTSLRQQN 137

Query: 429 N 431
           +
Sbjct: 138 S 138


>AL162424-4|CAO03565.1|  392|Homo sapiens LIM homeobox 6 protein.
          Length = 392

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 249 ICGPKFCIFRVPKTCXNTCKSCLLKNTDST*LSLNVKSIYIANKKTLFCSRCVTSKNTQK 428
           +C P      VP    N C SC L+  D   L +N     I + + L CS C TS   Q 
Sbjct: 81  VCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVN---NLIWHVRCLECSVCRTSLRQQN 137

Query: 429 N 431
           +
Sbjct: 138 S 138


>AL162424-3|CAI14704.1|  348|Homo sapiens LIM homeobox 6 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 249 ICGPKFCIFRVPKTCXNTCKSCLLKNTDST*LSLNVKSIYIANKKTLFCSRCVTSKNTQK 428
           +C P      VP    N C SC L+  D   L +N     I + + L CS C TS   Q 
Sbjct: 52  VCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVN---NLIWHVRCLECSVCRTSLRQQN 108

Query: 429 N 431
           +
Sbjct: 109 S 109


>AL162424-2|CAI14703.1|  363|Homo sapiens LIM homeobox 6 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 249 ICGPKFCIFRVPKTCXNTCKSCLLKNTDST*LSLNVKSIYIANKKTLFCSRCVTSKNTQK 428
           +C P      VP    N C SC L+  D   L +N     I + + L CS C TS   Q 
Sbjct: 52  VCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVN---NLIWHVRCLECSVCRTSLRQQN 108

Query: 429 N 431
           +
Sbjct: 109 S 109


>AB031042-1|BAA83423.1|  348|Homo sapiens LIM-homeodomain (LHX)
           protein 6.1b protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 249 ICGPKFCIFRVPKTCXNTCKSCLLKNTDST*LSLNVKSIYIANKKTLFCSRCVTSKNTQK 428
           +C P      VP    N C SC L+  D   L +N     I + + L CS C TS   Q 
Sbjct: 52  VCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVN---NLIWHVRCLECSVCRTSLRQQN 108

Query: 429 N 431
           +
Sbjct: 109 S 109


>AB031041-1|BAA83422.1|  363|Homo sapiens LIM-homeodomain (LHX)
           protein 6.1a protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 249 ICGPKFCIFRVPKTCXNTCKSCLLKNTDST*LSLNVKSIYIANKKTLFCSRCVTSKNTQK 428
           +C P      VP    N C SC L+  D   L +N     I + + L CS C TS   Q 
Sbjct: 52  VCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVN---NLIWHVRCLECSVCRTSLRQQN 108

Query: 429 N 431
           +
Sbjct: 109 S 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,628,893
Number of Sequences: 237096
Number of extensions: 1036181
Number of successful extensions: 5311
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5311
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)