Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5597
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...   105   7e-24
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   3.2  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.2  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.2  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   5.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.7  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   9.7  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score =  105 bits (251), Expect = 7e-24
 Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
 Frame = +3

Query: 105 KKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 284
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P VYK+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 285 QATMAAAERFKAPET------TATGNDASTTGTTVAPIAXXXXXXXXXXXXXXXXXXXIV 446
           QA      + +A ET      T    DA    T                         +V
Sbjct: 84  QARAFNESQKQATETKEEAAITEESGDAQPADTAKIE-ESFEQEKAVDETGVDAKDIELV 142

Query: 447 MSQANVSRAKAVRALKNNQSDIVNAIMELTM 539
           M+QANVSRAKAV ALK N SD+VNAIM LTM
Sbjct: 143 MAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 13  FGTRVHQMQVESQTRLLELTSSANRN 90
           +GT  HQ ++E + RLL +  S  RN
Sbjct: 232 YGTASHQPRLEKEARLLNIIHSTIRN 257


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 294 MAAAERFKAPETTATGNDASTTGTTVA 374
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 294 MAAAERFKAPETTATGNDASTTGTTVA 374
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 176 SDCHSLYSLYWFETEFTHYLSGLLLTTRLFRF 81
           +D    ++L W  T F H +S + +  RLF F
Sbjct: 184 ADIQCYFALSWLITWFAHDVSDISVVCRLFDF 215


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 126  SKLGLK--PVQG--VERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 284
            +KL LK  PV+G  VER  +    +I   +   D+Y  P  DT +V      ED S+
Sbjct: 976  TKLDLKFSPVEGIMVERTAVNNFVDIGVSVAPKDLYGYPLYDTEVVSLAFNKEDASS 1032


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 8   PNSARGCTRCRWNHKPD 58
           P+S +  T+C W + PD
Sbjct: 105 PHSKKNDTKCNWKYNPD 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,557
Number of Sequences: 5004
Number of extensions: 40404
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)