Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5597
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...   143   1e-34
AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...   140   6e-34
U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    33   0.24 
Z50109-1|CAA90433.3|  142|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    27   8.9  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    27   8.9  

>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score =  143 bits (346), Expect = 1e-34
 Identities = 85/159 (53%), Positives = 98/159 (61%)
 Frame = +3

Query: 63  GIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDT 242
           G  I  ++KQSR EKKARK+ SKLGLK V GV RV IRKSKNILFVIN PDV+K+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 243 YIVFGEAKIEDLSTQATMAAAERFKAPETTATGNDASTTGTTVAPIAXXXXXXXXXXXXX 422
           YI+FGEAKIEDL+  A M+A E  K P   A          TV                 
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLK-PTREA------PQLKTVEEDENEDVEFKEDSTGI 158

Query: 423 XXXXXXIVMSQANVSRAKAVRALKNNQSDIVNAIMELTM 539
                 +V+SQAN +R KA+RALK   +DIVNAIM LTM
Sbjct: 159 EEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLTM 197


>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score =  140 bits (340), Expect = 6e-34
 Identities = 84/163 (51%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
 Frame = +3

Query: 63  GIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDT 242
           G  I  ++KQSR EKKARK+ SKLGLK V GV RV IRKSKNILFVIN PDV+K+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 243 YIVFGEAKIEDLSTQATMAAAERFK----APETTATGNDASTTGTTVAPIAXXXXXXXXX 410
           YI+FGEAKIEDL+  A M+A E  K    AP+      D +                   
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLKPTREAPQLKTVEEDEN-------------EDVEED 152

Query: 411 XXXXXXXXXXIVMSQANVSRAKAVRALKNNQSDIVNAIMELTM 539
                     +V+SQAN +R KA+RALK   +DIVNAIM LTM
Sbjct: 153 STGIEEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLTM 195


>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +3

Query: 39  GGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDV 218
           GG   P     ++ K+  +  +KK +  + KL +  + G+E V + K    +   N+P V
Sbjct: 23  GGKGTPRRKKKVIHKTAAA-DDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKV 81

Query: 219 YKNPHSDTYIVFGEA 263
             +  ++T+ V G A
Sbjct: 82  QTSVPANTFSVTGSA 96


>Z50109-1|CAA90433.3|  142|Caenorhabditis elegans Hypothetical
           protein C09H10.1 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 270 EDLSTQATMAAAERFKAPETTATGNDASTT 359
           ED ++Q T AAA   +AP  + +GN    T
Sbjct: 36  EDATSQVTAAAANPAQAPSASISGNSVQNT 65


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 120 IMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAK 266
           I S    K +  VER +I+K + +LF + + D  +NP     IV G+ K
Sbjct: 796 IRSAKNEKSIIPVERCSIQKCREVLFNMITLDNKQNPFCLNCIVKGKVK 844


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
           protein.
          Length = 1908

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 380 YWCYRCSSCGSVIASG--CGFWCLESLSCSHGGL 285
           Y C R +SC +  AS   C  WCLES  C  G L
Sbjct: 649 YDCNRYTSCSTCSASQFPCD-WCLESNECVAGKL 681


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
           protein.
          Length = 1951

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 380 YWCYRCSSCGSVIASG--CGFWCLESLSCSHGGL 285
           Y C R +SC +  AS   C  WCLES  C  G L
Sbjct: 655 YDCNRYTSCSTCSASQFPCD-WCLESNECVAGKL 687


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,988,743
Number of Sequences: 27780
Number of extensions: 236612
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)