Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5596
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    29   0.77 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.4  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    27   1.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   4.1  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   7.2  

>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = -3

Query: 264 FPYKKIFVLKYRSFRAL-LYIHTLLVLSYL 178
           FP++KIF L Y  +  L +Y++++L+L +L
Sbjct: 121 FPFQKIFALGYLRWYGLGVYLYSILILLFL 150


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 502 SATRWLHFD*FLIPLLDGSNIINILCFIFNEGIVNFRRQIKTCMIY*FFYVLC 344
           S  R  H   F+ P    SN++   CF F   + +F   + T + + FF+ LC
Sbjct: 86  SHCRRFHIAIFIHPY--DSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLC 136


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 350 NIKKLINHTSLYLSPKIYNSFIKNKT*DIYYVTAI 454
           N+KK++NH  L  S ++ +S    +T  I Y++AI
Sbjct: 240 NVKKILNHACLLESERLGSSMPNVETSIIDYISAI 274


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 346 CIVIQ*LNAITLTT*YKLRGIRYKKSLVSIQKNICLKVSQFQGSVIYTHPTRFI 185
           C  +Q L +   T  Y+LR  R      S+++N   K+S  +G   Y H  +FI
Sbjct: 748 CCFLQVLFSNNFTFRYRLRNDREIFFWKSLERNPSTKLSAQKGLYAYEHMFQFI 801


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 581 YFIYIDNTHKLVIDKELKHSTKKFTGV 501
           YF+++DN   +  +  LK S +K++ +
Sbjct: 135 YFVHMDNISPVTTNGSLKESLRKYSSI 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,519
Number of Sequences: 5004
Number of extensions: 42320
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)