Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5596
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    29   3.2  
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243...    28   5.6  
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530...    28   7.5  

>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 557 HKLVIDKELKHSTKKFTGVGH*MASLRLVSHSSSR 453
           HKL++D  + HSTK ++   H + +LR   HS+ R
Sbjct: 748 HKLILDWNVNHSTKDYSQEEHILENLR--PHSNLR 780


>07_03_1521 +
           27419859-27420106,27422050-27423363,27423885-27424308,
           27424540-27424968,27425228-27425305,27426581-27426839,
           27428542-27428552
          Length = 920

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 97  TSRWTWNSVPMARETRLITPHLHPPH 174
           T+R  WNS   AR      P LHP H
Sbjct: 892 TARLDWNSTVSARPDSQAVPGLHPQH 917


>01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,
            5309110-5309356,5309694-5309839,5312482-5312707,
            5313652-5313874,5314054-5314202,5315345-5315514,
            5316064-5316135,5317610-5317741,5317813-5317900,
            5319440-5319656,5320123-5320306,5320644-5320727,
            5321148-5321242,5321519-5321562,5321707-5322367,
            5323053-5323356
          Length = 1218

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 401  KFSETNKDLYDLLIFLCSVYSYTIIKCHNFNNI 303
            +F ET +DL D+    C++Y     K  + NN+
Sbjct: 1141 EFEETPRDLDDVFSEACAIYQIAYEKARSANNV 1173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,512
Number of Sequences: 37544
Number of extensions: 226944
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)