Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5595
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   1.8  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   3.2  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    24   7.3  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   7.3  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    24   7.3  

>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 192 KSAVHSMGSTRQPSLPGVSRNRSSKAKISIT 284
           K  VH   +TR+P+ P   ++ +SK+K   T
Sbjct: 143 KPVVHQTRATRKPAQPKAEKSTTSKSKSHTT 173


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 192 KSAVHSMGSTRQPSLPGVSRNRSS 263
           +S + ++GS  QP  P   RNRSS
Sbjct: 61  RSRMSTLGSANQPMAPPSLRNRSS 84


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 264 WNCDCD*LLVGLV-GGWSPCCVLLISLALAFAIEFDRLALACFC 136
           W+     LL+G+  GG+ PC  L IS+      +  RLA    C
Sbjct: 133 WSLVLTRLLLGICEGGFFPCLSLYISMTYKREEQGKRLAYLYVC 176


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 195 SAVHSMGSTRQPSLPGVSRNRSSKAK 272
           S   S+ S ++PS PG+S +  S+++
Sbjct: 101 SPSQSLSSNKEPSSPGISPSNDSQSQ 126


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 145 LFLWLWTMSMTPPIIFSGMWRTFRGSNSAVVVL 47
           +F WL  ++ TP ++   +W T  G +   V++
Sbjct: 71  VFQWLIALTATPRLLVLLLWFTLSGISRPSVII 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,084
Number of Sequences: 5004
Number of extensions: 28138
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)