Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5594
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    25   5.6  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   5.6  
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po...    25   5.6  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    24   7.4  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    24   7.4  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    24   7.4  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    24   9.8  

>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 228 NFSLFHENMIKIYLFSILIRFFSMKCFKKIGFEPIL 335
           NF + HE++     + IL +F    CF     + +L
Sbjct: 71  NFEIIHESLRFTVFYQILSQFMQNICFHDFTIQDLL 106


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -1

Query: 108 SKEREYPQKIKNETLSRQEHQSYTRNETSTAHCQ 7
           +  ++YP +      S+ +H  YT+N     + Q
Sbjct: 21  ASNKDYPDRFNEFDNSQNDHNDYTQNNAQFQNAQ 54


>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 164

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 113 FVNEYYQN*SYFILVVIRTYSCDKMAS 193
           F + YY+   YFI  V+   SC  MA+
Sbjct: 91  FASNYYRGLVYFIFSVVTFLSCIFMAT 117


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 31  VSRIGLVFLTAQSFIFYFLGVFSFF 105
           + +IG V  TA  F+F  +G+F FF
Sbjct: 6   LQKIG-VGTTALGFLFMIMGIFMFF 29


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 198 TRFCSQMILFNFSLFHENMIK 260
           ++FC+ M+L+ FS F   +IK
Sbjct: 295 SQFCADMVLYGFSSFLPVIIK 315


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 62  LKVSFF--IFWGYSLSLLQF-VNEYYQN*SYFILV 157
           L VSFF   FWGYSL+  Q   + Y  N  +F  +
Sbjct: 88  LCVSFFQWYFWGYSLAFSQTGTSGYIGNLRHFAFI 122


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 123 SLTN*SKEREYPQKIKNETLSRQEHQSYTRNET 25
           S+ N     E+P K ++E  S  +H+S T  E+
Sbjct: 320 SVHNQLAANEFPNKSQSEEGSNDDHKSVTTTES 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,503,869
Number of Sequences: 5004
Number of extensions: 25402
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)