Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5594
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   2.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   2.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   9.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 170 YSCDKMASLHKILQPNDFVQFF 235
           +S +K    H I+ PN +++ F
Sbjct: 122 FSNEKEGHFHNIIMPNVYIRIF 143


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 170 YSCDKMASLHKILQPNDFVQFF 235
           +S +K    H I+ PN +++ F
Sbjct: 122 FSNEKEGHFHNIIMPNVYIRIF 143


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 386 PSGCILVDYLRNSLL 342
           P+G +L+DYL +++L
Sbjct: 722 PTGQLLLDYLTDTVL 736


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 110 QFVNEYYQN 136
           Q V+EYYQN
Sbjct: 947 QIVSEYYQN 955


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 93  YPQKIKNETLSRQEHQSYTRNETSTAHC 10
           YP+  +N  L  +  +SY+ N  +   C
Sbjct: 646 YPEFQENVQLCSEISESYSSNNKTLCKC 673


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,696
Number of Sequences: 438
Number of extensions: 1530
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)