Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5590
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-5|AAG23995.1|  343|Caenorhabditis elegans Serpentine re...    28   7.3  
Z81564-8|CAB04571.1|  140|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF016449-5|AAG23995.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein185 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 526 SKESHVSLSWAILGYYTLLFFF 591
           S ES  SL W++L Y++++ FF
Sbjct: 45  SSESLESLKWSLLNYHSMVIFF 66


>Z81564-8|CAB04571.1|  140|Caenorhabditis elegans Hypothetical
           protein K05C4.8 protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 533 NPMYLYHGLSWAIIPSCFFFLPKLLALEKL 622
           +PM L   +SWA+ P+C F  P +L ++KL
Sbjct: 33  SPMSLAVSISWAVGPTCAFNSP-MLPVKKL 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,595,820
Number of Sequences: 27780
Number of extensions: 162483
Number of successful extensions: 281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)