Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5588
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   0.87 
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   2.7  
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    26   4.7  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    26   4.7  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   6.2  
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces...    25   6.2  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 482  NEVKSFIIQNVSLYSLAPTRRDLR 411
            NE+K  II  +S+Y +A  R+D++
Sbjct: 954  NEIKYLIIDEISIYKIAKERQDIQ 977


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 482 NEVKSFIIQNVSLYSLAPTRRDL 414
           N ++SFI++N S   LAP RR L
Sbjct: 388 NSLRSFILENRSKSKLAPVRRYL 410


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 17  KNIDTKIFGHTHHLT*RIQEEPIK 88
           K +  KI G+T HL  RIQ  P++
Sbjct: 44  KRLRNKIAGYTTHLMKRIQRGPVR 67


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 17  KNIDTKIFGHTHHLT*RIQEEPIK 88
           K +  KI G+T HL  RIQ  P++
Sbjct: 44  KRLRNKIAGYTTHLMKRIQRGPVR 67


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -1

Query: 549 LYKTSLIEPKIIIKNFILQKKKKRSEKFYYTKCQFVFF 436
           +Y   +   ++ + +F+ ++K+     F++  C+FVFF
Sbjct: 96  IYTFFVHSARVFLYHFLNEEKEFTLASFFWGLCRFVFF 133


>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 576 ARRGVKQNNLYKTSLIEPKIIIKNFILQKKKKRSEKF 466
           ARRG+K+   +   +IE +      +L KK+K  ++F
Sbjct: 194 ARRGMKKKQKHIEKVIENEARESGTVLAKKRKERKQF 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,920
Number of Sequences: 5004
Number of extensions: 29935
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)