Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5587
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    27   2.6  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   6.0  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   7.9  

>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 516 IISHGLCSSGIFCLANINYERLHSRSLYINRGMINFI 626
           ++S GL SSGI  L  I    +     YI  GM++ +
Sbjct: 105 LVSAGLISSGIMTLIQIARVHIPKTKYYIGTGMLSVL 141


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 54  GSLPLLIGIIYIFNDLNTITIYFLKFFNMNMY 149
           G LP++I +      ++ + I+F+  FN N Y
Sbjct: 40  GILPIIITLFIFSFVISRMIIFFISLFNKNTY 71


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 57  SLPLLIGIIY--IFNDLNTITIYFLKFFNMNMY---LLYISIIFAFLVKIPIYFVHL 212
           SL + IG+IY  ++       I F   ++  +    L+Y+ I+   L+ +  YFV L
Sbjct: 322 SLNIYIGLIYSILYLWFEAFPILFTSVYHFTIIENGLVYLGILVGALITLACYFVFL 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,834
Number of Sequences: 5004
Number of extensions: 27381
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)