Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5587
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230...    31   0.88 
09_03_0154 + 12831120-12831222,12831761-12831858,12832019-128321...    29   3.5  
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270...    28   6.2  

>06_03_0611 -
           22721977-22722276,22722765-22722853,22722978-22723083,
           22723178-22723306,22723803-22723887,22723994-22724103,
           22724424-22724624,22725033-22725394,22725612-22725695,
           22725791-22725916,22725999-22726161,22726378-22726536,
           22727147-22727274,22727371-22727493,22727755-22727899,
           22727992-22728068,22728318-22728696,22729325-22729411
          Length = 950

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 27  IYLLFYTLFGSLPLLIGIIYI-FNDLNTITIYFLKFFNMNMYLLYISIIF 173
           +YL+ + +FGS+   IG+ +   ND +   ++F  F N+ + L +++  F
Sbjct: 408 VYLVLFVVFGSV---IGLNFFKINDYSIQFVFFFSFMNLQIVLAFLTATF 454


>09_03_0154 +
           12831120-12831222,12831761-12831858,12832019-12832195,
           12832307-12832407,12832503-12832578,12832665-12832724,
           12832810-12832994,12833078-12833174,12833279-12833365,
           12833453-12833511,12833617-12833708,12833821-12833898,
           12834000-12834160,12834267-12834485
          Length = 530

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 39  FYTLFGSLPLLI--GIIYIFND-LNTITIYFLKFFNMNMYLLYISIIFAFL--VKIPIYF 203
           F  LF S+PL I  G+  IF   +    + FL+F N+N +     + FAF   + +P YF
Sbjct: 381 FGALFASIPLPIFAGMYCIFFAYVGACGLSFLQFCNLNSFRTKFILGFAFFMGISVPQYF 440


>09_03_0029 +
           11724581-11724583,11726413-11726610,11726874-11727038,
           11727217-11727283,11727645-11727812,11728070-11728194,
           11728288-11728446,11728552-11728714,11728795-11728920,
           11729000-11729083,11729161-11729528,11729613-11729813,
           11729909-11730018,11730113-11730197,11730360-11730488,
           11730580-11730667,11730805-11730893,11730968-11731267
          Length = 875

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 27  IYLLFYTLFGSLPLLIGI-IYIFNDLNTITIYFLKFFNMNMYLLYISIIFAFLVK 188
           IY+ F+ +FGS   LIG+  +  ND +    +F  + N+ + L +    F   VK
Sbjct: 337 IYMTFFVIFGS---LIGLNFFRLNDYSIQFAFFFIYINLQIALAFFVASFFSSVK 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,719,088
Number of Sequences: 37544
Number of extensions: 128543
Number of successful extensions: 240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)