Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5586
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.0  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   8.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   8.8  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 629  VAVEQPKFKICYSLKLQKNG 688
            V+   P FKICY LK+ + G
Sbjct: 2003 VSQNNPTFKICYDLKIHELG 2022


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 618 MLVGLSTVITHTYFFQFKCFSLTILDLPTKRD 523
           +L G S +   +Y+F+F    +TI+D PT ++
Sbjct: 49  ILSGTSLLEYMSYWFEFPELFVTIVDFPTPKE 80


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 693 LVPFFCNFKE*HILN--LGCSTATTYLMLVGLSTVITHTYFFQFK 565
           LVPF        I+N  LG     T+ + VG++ ++T  +F+  K
Sbjct: 843 LVPFIALSAAFGIMNKRLGGIQQVTFFLAVGMADIVTINFFYLVK 887


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,112
Number of Sequences: 5004
Number of extensions: 55442
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)