Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5586
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL031630-2|CAA21000.1|  310|Caenorhabditis elegans Hypothetical ...    29   4.7  

>AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical
           protein Y39C12A.3 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 327 FQFKCFL*PYWIYRQNEIYSNMLNRI 250
           F   CFL PY  Y+ +E + N L+RI
Sbjct: 255 FTLLCFLAPYLTYKMSEAWQNELHRI 280


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 658 YFEFRLFYRDHLF-NVGWFIYCDYTYILF 575
           YF + LF  DHLF +  WF+ C Y  +LF
Sbjct: 3   YF-YSLFSLDHLFISRYWFVVCSYCSLLF 30


>AL031630-2|CAA21000.1|  310|Caenorhabditis elegans Hypothetical
           protein Y38H6C.2 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 627 TYLMLVGLSTVITHTYFFQFKCFSLTILDLPTK 529
           T  + V LST++T +YFF F+ F  T + LP K
Sbjct: 99  TMAISVALSTLLTFSYFFSFEFFEETWV-LPKK 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,435,239
Number of Sequences: 27780
Number of extensions: 302899
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)