Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5586
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       27   0.25 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.76 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -1

Query: 720 RINSNSVNRLVPFFCNFKE*HILNLGCSTATTYLMLVGLSTVI 592
           R+N+++   L+P    F E HI+++   +    +  +G +TV+
Sbjct: 17  RVNNSNYTELLPIDMRFNEGHIVSIVFYSVLMIISAIGNTTVL 59


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 12/17 (70%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -1

Query: 648 LGCSTATTYLM-LVGLS 601
           L CSTAT Y+M +VGLS
Sbjct: 157 LACSTATVYVMSVVGLS 173


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -1

Query: 273 YSNMLNRIPPSAVS*KFV*PNHFNSLNRLVFFFQFSK*AGNIFLVIMNIVFL 118
           ++N L RIP + ++ +    N+F SL+R +  F   K A     ++M +  +
Sbjct: 296 HNNCLTRIPSTRINKQHTRGNNF-SLSRKLAKFAKEKKAAKTLGIVMGVFII 346


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -2

Query: 548 YWIYRQNEIYSNMLK 504
           Y  +++NE+Y+N++K
Sbjct: 332 YAQHKENELYANLMK 346


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -2

Query: 548 YWIYRQNEIYSNMLK 504
           Y  +++NE+Y+N++K
Sbjct: 370 YAQHKENELYANLMK 384


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 692  WYHFFVTLRNN 660
            WYH  VT  NN
Sbjct: 1529 WYHLRVTAHNN 1539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,938
Number of Sequences: 438
Number of extensions: 3695
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)