Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5585
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    29   0.31 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   2.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   6.8  

>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 84  TMRAHRDTKLTE*SCPLNRSLQYDRRNLASLNIAAGELSEPYR 212
           T+ A+   K +E + P+N +L +   NL+  +  A  LSEP+R
Sbjct: 170 TLEAYVIAKASEKAFPINETLSH-LANLSKQDCVANSLSEPFR 211


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 111 LTE*SCPLNRSLQYDRRNLASLNIAAGELSEPYRELPNLYDV 236
           L + S P+ R+     + L +L+ + G + +PY E P+L D+
Sbjct: 696 LQDQSSPIRRAAAL--KALGNLSSSTGYVIDPYIEFPSLLDI 735


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 192  HLRLYSDSPSYVGRIVMSD 136
            H+R+ +D PSYV    +SD
Sbjct: 3364 HMRIIADKPSYVTMQTISD 3382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,845
Number of Sequences: 5004
Number of extensions: 23084
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)